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SCN18_30_10_14_R3_B_scaffold_1584_12

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(9592..9939)

Top 3 Functional Annotations

Value Algorithm Source
Helix-turn-helix domain-containing protein n=1 Tax=Agrobacterium tumefaciens str. Cherry 2E-2-2 RepID=M8A6L7_RHIRD similarity UNIREF
DB: UNIREF100
  • Identity: 55.5
  • Coverage: 110.0
  • Bit_score: 134
  • Evalue 6.50e-29
Helix-turn-helix domain-containing protein {ECO:0000313|EMBL:EMS96599.1}; TaxID=1281779 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Agrobacterium tumefaciens str. Cherry 2E-2-2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 55.5
  • Coverage: 110.0
  • Bit_score: 134
  • Evalue 9.10e-29
XRE family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 37.5
  • Coverage: 104.0
  • Bit_score: 71
  • Evalue 1.10e-10

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Taxonomy

SCNPILOT_CONT_500_BF_Rhizobiales_63_22 → SCNPILOT_CONT_500_BF_Rhizobiales_63_22 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 348
GTGGACCTTAAGCAGGCATTCGGGACGAACGTGCGCCATCACCGGCGGGCAGCCGGCATGACCCAGGAAAGCCTGGCTGAATCGGTCGACGTGTCGGTCGAGACTATCGGTAAGATCGAGCGCGGCGTTGCTGCTCCGTCCTTCGACACGGTAGAGAAAATCGCCCTTGCTCTTGGCTTGCCGCCGCTCGCCCTCTTTGGCGTCGGTGACGATGCAACGCCGAAGGGCGAGCGCGGAAAGTTGTTGATGCACATCCATGCCGTTCTTGCCGACATGAACGCGGATCAGTTGGCGCGAACCGCAAGTATGCTTGACGCCTTCATGGGACGCTTGACGCCACCTGGTTAG
PROTEIN sequence
Length: 116
VDLKQAFGTNVRHHRRAAGMTQESLAESVDVSVETIGKIERGVAAPSFDTVEKIALALGLPPLALFGVGDDATPKGERGKLLMHIHAVLADMNADQLARTASMLDAFMGRLTPPG*