ggKbase home page

SCN18_30_10_14_R3_B_scaffold_1728_11

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(11550..12281)

Top 3 Functional Annotations

Value Algorithm Source
rrmJ; ribosomal RNA large subunit methyltransferase J (EC:2.1.1.-) similarity KEGG
DB: KEGG
  • Identity: 80.2
  • Coverage: 243.0
  • Bit_score: 387
  • Evalue 2.50e-105
hemolysin n=1 Tax=Afipia birgiae RepID=UPI00031374DC similarity UNIREF
DB: UNIREF100
  • Identity: 84.0
  • Coverage: 243.0
  • Bit_score: 405
  • Evalue 2.40e-110
Hemolysin TlyA family protein {ECO:0000313|EMBL:EKS41306.1}; TaxID=883078 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia broomeae ATCC 49717.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 84.0
  • Coverage: 243.0
  • Bit_score: 403
  • Evalue 1.70e-109

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Afipia_61_20 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 732
ATGACCACAAAGCAGCGTGCGGATGTTCTTCTTGTCGAGCGCGGACTGTTCGAAAGCCGCGCCCGCGCGCAGGCCGCGATCGAGGCCGGCGGCGTGTTCGCCGATGGCGAGCCGGTGACCAAACCCTCCGCGATGATTGCGCTTGATGCCGCAATCGAAGCGGAGCCCGCGCATCCCTGGGTGTCGCGCGGCGGCGTCAAGCTCGCGGCGGCGCTAGAGCATTATCCCATCGAGATAGAGGACCACGTCTGCGTCGATGTCGGCGCCTCCACCGGCGGCTTTACCGAAGTGCTGCTCGCGAACGGCGCGAGCCTTGTCTACGCCATCGATGTCGGCACCCGGCAATTGCATCCGAGTCTGCACGGCAATCCGAAAATCGTGTCGATGGAGAACACCGACATTCGCTCGCTGGCCGGCAAGCGGCTGGAGATCCGGCCCGATATCGTGGTGATCGATGTCAGCTTCATCTCGCTGAAGCTGGTGCTGCCTGCGGTGCTGCCGCTGGCCGCCGCCCCGATGCATCTGCTCGCGCTGATCAAGCCGCAATTCGAGGCCGACCGCAAACATTCCAAGAAGGGCATCATCCGCGACGAGGCCGTGCAGCGCGCGGTGTGCGACGACATCGCCGCCTTTGCAACCTCGCTCGGCTGCAGCGAGATCGAGGTGTTTCCCTCGGCAATTCCCGGCGGCGACGGCAACCGCGAATTCTTCCTCGGCGCGCGGCGAGGATAG
PROTEIN sequence
Length: 244
MTTKQRADVLLVERGLFESRARAQAAIEAGGVFADGEPVTKPSAMIALDAAIEAEPAHPWVSRGGVKLAAALEHYPIEIEDHVCVDVGASTGGFTEVLLANGASLVYAIDVGTRQLHPSLHGNPKIVSMENTDIRSLAGKRLEIRPDIVVIDVSFISLKLVLPAVLPLAAAPMHLLALIKPQFEADRKHSKKGIIRDEAVQRAVCDDIAAFATSLGCSEIEVFPSAIPGGDGNREFFLGARRG*