ggKbase home page

SCN18_30_10_14_R3_B_scaffold_1728_12

Organism: SCN18_30_10_14_R3_B_SCNPILOT_CONT_500_BF_Rhizobiales_64_17-related_63_20

near complete RP 42 / 55 MC: 5 BSCG 42 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(12500..14416)

Top 3 Functional Annotations

Value Algorithm Source
1-deoxy-D-xylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897}; EC=2.2.1.7 {ECO:0000256|HAMAP-Rule:MF_00315, ECO:0000256|SAAS:SAAS00085897};; 1-deoxyxylulose-5-phosphate synthase {ECO:0000256|HAMAP-Rule:MF_00315}; TaxID=709797 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae.;" source="Bradyrhizobiaceae bacterium SG-6C.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.2
  • Coverage: 640.0
  • Bit_score: 1121
  • Evalue 0.0
dxs1; 1-deoxy-D-xylulose-5-phosphate synthase (EC:2.2.1.7) similarity KEGG
DB: KEGG
  • Identity: 84.9
  • Coverage: 635.0
  • Bit_score: 1089
  • Evalue 0.0
1-deoxy-D-xylulose-5-phosphate synthase n=2 Tax=Bradyrhizobiaceae RepID=F7QJV3_9BRAD similarity UNIREF
DB: UNIREF100
  • Identity: 87.2
  • Coverage: 640.0
  • Bit_score: 1121
  • Evalue 0.0

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Afipia_62_8 → Afipia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1917
GTGTCCTCAGCCAGCCCGACGCCCTTGCTCGATACACTCGACACGCCCGACAAGCTGCGCCGGCTGAAACCCGAGCAGCTTCGCCAAGTCGCCGACGAGCTGCGCCACGAGACCATCTCGGCCGTCTCGGTCACCGGCGGCCATCTCGGCGCCGGCCTTGGCGTGGTGGAACTGACCACGGCGCTGCACTACGTTTTCAACACGCCGGACGACCGCATCATCTGGGACGTCGGCCACCAGGCCTATCCGCACAAGATTCTCACCGGCCGGCGCGACCGCATCCGCACCCTCCGCCAGGGCGGCGGGCTGTCCGGCTTCACCAAGCGCGCCGAGAGCGAGTACGACCCGTTCGGCACCGCGCATTCCTCGACCTCGATCTCCGCCGGCCTCGGCATGGCGGTGGGGCGCGATCTGCTCGGCCGCAAGAACAACGTCATCGCGGTGATCGGCGATGGCTCGATGTCCGCCGGCATGGCCTATGAGGCGATGAACAACGCCGGCGCGCTGAACTCGCGCCTGATCGTCATCCTCAACGATAACGACATGTCGATCGCCCCGCCGGTCGGCGCGATGTCGGCCTATCTCGCGCGCCTGCTGTCGAGCCAGACCTACGGCTCCGCCCGCGAAATCCTGAAGAACCTCGCCCATCGCATGCCGAAATTCTTCGAGGACCGCGCGCTGCGCGCCGAGGAATACGCCCGCGGCATGGTGACCGGCGGCGCGCTGTTCGAGGAGCTCGGCCTGTTCTATGTCGGACCGATCGACGGCCACAACCTCGATCATCTGCTGCCGGTGCTGACCAATGTGCGCGACAACGGCAACGGGCCGGTGCTGATCCACGTCGTCACCAAGAAGGGCAAGGGCTACGCCCCGGCCGAGGAATCCGACGACAAGTATCATGGCGTTGTGAAGTTCGACATCGTCACCGGCAAGCAGATGAAGGCGAAGTCCAACGCCCCGTCCTACACCGCGGTGTTCGGCCAGAGCCTCGTCAAGGAAGCGCAGAAGGACGACAAGATCGTCGCCATCACCGCGGCGATGCCCGGCGGCACCGGCATCGATATCTTCGCCAAGGCGTTTCCCGAGCGCACCTTCGATGTCGGCATCGCCGAGCAGCATGCGGTGACGTTCGCCGCCGGCCTCGCCACCGAAGGCTTCAAACCGTTCTGTGCGCTGTATTCCACCTTCCTGCAGCGCGGTTACGATCAGGTTATCCACGATGTCGCGATCCAGCGTCTGCCGGTGCGCTTCGCCATCGACCGCGCCGGGCTGGTCGGCGCCGACGGTCCCACCCATGCGGGCGCATTCGACAACGCCTATCTCGGCTGCCTGCCCGGCCTGGTGATCATGGCCGCGGCGGACGAGGCCGACCTTGTGCACATGGTGGCGACGCAGGTCGCGATCAACGACGCGCCGAGCGCGTTGCGCTATCCGCGCGGCGAAGGCCGCGGCGTCGAAATGCCGGAAGTCGGCGTGCCGCTGCCGATCGGCAAGGGCCGCATCATGCGCGAAGGCGCCAAGGTGGCCCTGCTCTCCTTCGGCACAAGGCTTGGCGAATGCCTCAAGGCGGCGGACGATCTCGCCGCGCAGGGCATCAACCCGACCATCGCCGACGCGCGTTTCATGAAGCCGCTCGATGTCGAGCTGGTACTCAAGCTGGCGCGCGAGCACGAGGTGCTCATCACCATCGAGGAAGGCTCGGTCGGCGGCTTCGGCACTCACGTCATCCAGACGCTGGCCGATCACGGCATGCTCGATCGCGGCCTCAAGGTGCGCACCATGGTGCTGCCCGACACCTTCATCGATCAGGACACGCCGGCGAAGATGTACGAACAGGCCGGTCTCGACGCCAAGGGCATCATCACCAAGGTGCTCGATGTGTTGGGCTCCAGCAGCCCGACGGTGAAGTCGGCCTGA
PROTEIN sequence
Length: 639
VSSASPTPLLDTLDTPDKLRRLKPEQLRQVADELRHETISAVSVTGGHLGAGLGVVELTTALHYVFNTPDDRIIWDVGHQAYPHKILTGRRDRIRTLRQGGGLSGFTKRAESEYDPFGTAHSSTSISAGLGMAVGRDLLGRKNNVIAVIGDGSMSAGMAYEAMNNAGALNSRLIVILNDNDMSIAPPVGAMSAYLARLLSSQTYGSAREILKNLAHRMPKFFEDRALRAEEYARGMVTGGALFEELGLFYVGPIDGHNLDHLLPVLTNVRDNGNGPVLIHVVTKKGKGYAPAEESDDKYHGVVKFDIVTGKQMKAKSNAPSYTAVFGQSLVKEAQKDDKIVAITAAMPGGTGIDIFAKAFPERTFDVGIAEQHAVTFAAGLATEGFKPFCALYSTFLQRGYDQVIHDVAIQRLPVRFAIDRAGLVGADGPTHAGAFDNAYLGCLPGLVIMAAADEADLVHMVATQVAINDAPSALRYPRGEGRGVEMPEVGVPLPIGKGRIMREGAKVALLSFGTRLGECLKAADDLAAQGINPTIADARFMKPLDVELVLKLAREHEVLITIEEGSVGGFGTHVIQTLADHGMLDRGLKVRTMVLPDTFIDQDTPAKMYEQAGLDAKGIITKVLDVLGSSSPTVKSA*