ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1282

Search features with annotation key words

Displaying items 31-60 of 77 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_30_10_14_R2_B_scaffold_1282_30
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

comp(28333..29229)
DNA (897bp) protein (299aa)
endonuclease n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C51D3
metal-dependent hydrolase
Metal-dependent hydrolase {ECO:0000313|EMBL:AGA24708.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1282_31
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(29303..30988)
DNA (1686bp) protein (562aa)
RNA polymerase sigma factor SigM n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A19
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49278.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
sigma-70 family RNA polymerase sigma factor
SCN18_30_10_14_R2_B_scaffold_1282_32
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

31086..32621
DNA (1536bp) protein (512aa)
RNA-splicing ligase RtcB {ECO:0000256|RuleBase:RU371113}; EC=6.5.1.- {ECO:0000256|RuleBase:RU371113};; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI000361C120
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1282_33
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(32593..34515)
DNA (1923bp) protein (641aa)
PAS/PAC sensor hybrid histidine kinase n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3A67
hybrid histidine kinase
Candidate histidine kinase, hybrid {ECO:0000313|EMBL:AEG92139.1}; TaxID=365046 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Ramlibacter.;" source="Ramlibacter tataouinensis (strain ATCC BAA-407 / DSM 14655 / LMG 21543; / TTB310).;"
SCN18_30_10_14_R2_B_scaffold_1282_34
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

34996..38022
DNA (3027bp) protein (1009aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D076_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20390.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1282_35
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

38025..39461
DNA (1437bp) protein (479aa)
Uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D077_9BACT
Uncharacterized protein {ECO:0000313|EMBL:EDY20391.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1282_36
CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, CN-SCN_Acidobacteria_32x, Acidobacteria

Not on your lists

40879..42399
DNA (1521bp) protein (507aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0002D72FC9
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP37600.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCN18_30_10_14_R2_B_scaffold_1282_37
Singulisphaera acidiphila, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

42470..43186
DNA (717bp) protein (239aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C56AA
hypothetical protein
Repeat-companion domain TIGR02996 {ECO:0000313|EMBL:AGA28644.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1282_38
SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

43282..43995
DNA (714bp) protein (238aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI00030CF87D
Uncharacterized protein {ECO:0000313|EMBL:KKU48334.1}; TaxID=1618604 species="Bacteria; Microgenomates.;" source="Microgenomates (Woesebacteria) bacterium GW2011_GWF2_46_8.;"
hypothetical protein
SCN18_30_10_14_R2_B_scaffold_1282_39
unknown

Not on your lists

45095..45511
DNA (417bp) protein (139aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1282_40
Dyadobacter fermentans_SCNpilot_P_inoc_Dyadobacter_48_40, Dyadobacter, Cytophagales, Cytophagia, Bacteroidetes, Bacteria

Not on your lists

comp(45924..46961)
DNA (1038bp) protein (346aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3574
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADQ16074.1}; Flags: Precursor;; TaxID=649349 species="Bacteria; Bacteroidetes; Cytophagia; Cytophagales; Cytophagaceae; Leadbetterella.;" source="Leadbetterella byssophila (strain DSM 17132 / KACC 11308 / 4M15).;"
SCN18_30_10_14_R2_B_scaffold_1282_41
unknown

Not on your lists

47460..47774
DNA (315bp) protein (105aa)
hypothetical protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C3AFE
SCN18_30_10_14_R2_B_scaffold_1282_42
unknown

Not on your lists

comp(48303..48542)
DNA (240bp) protein (80aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1282_43
SCNPILOT_CONT_1000_BF_Mesorhizobium_65_39, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

48545..48874
DNA (330bp) protein (110aa)
Putative transcriptional regulator n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0D6W3_SINAD
transcriptional regulator
Putative transcriptional regulator {ECO:0000313|EMBL:AGA24573.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1282_44
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

48867..49328
DNA (462bp) protein (154aa)
Uncharacterized protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DNT9_SINAD
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGA30518.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1282_45
SCNPILOT_EXPT_300_BF_Sphingomonas_67_13, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

49428..49949
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Sorangium cellulosum So0157-2 RepID=S4XPY8_SORCE
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:AGP33900.1}; TaxID=1254432 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum So0157-2.;"
SCN18_30_10_14_R2_B_scaffold_1282_46
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(50528..50950)
DNA (423bp) protein (141aa)
SCN18_30_10_14_R2_B_scaffold_1282_47
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(51016..51963)
DNA (948bp) protein (316aa)
Prepilin-type N-terminal cleavage/methylation domain-containing protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DF62_SINAD
prepilin-type N-terminal cleavage/methylation domain-containing protein
Prepilin-type N-terminal cleavage/methylation domain-containing protein {ECO:0000313|EMBL:AGA27448.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1282_48
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

52305..54080
DNA (1776bp) protein (592aa)
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003163591
sigma-70 family RNA polymerase sigma factor
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA28748.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1282_49
unknown

Not on your lists

comp(54594..54911)
DNA (318bp) protein (106aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1282_50
Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9, Singulisphaera, Planctomycetales, Planctomycetia, Planctomycetes, Bacteria

Not on your lists

comp(54911..56464)
DNA (1554bp) protein (518aa)
Serine/threonine protein kinase-related protein n=1 Tax=Planctomyces limnophilus (strain ATCC 43296 / DSM 3776 / IFAM 1008 / 290) RepID=D5SPC7_PLAL2
serine/threonine protein kinase-related protein
Serine/threonine protein kinase-related protein {ECO:0000313|EMBL:ADG68271.1}; TaxID=521674 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Planctopirus.;" source="Planctopirus limnophila (strain ATCC 43296 / DSM 3776 / IFAM 1008 /; 290) (Planctomyces limnophilus).;"
SCN18_30_10_14_R2_B_scaffold_1282_51
unknown

Not on your lists

comp(56467..56919)
DNA (453bp) protein (151aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1282_52
SCNPILOT_CONT_300_BF_Rhizobiales_62_47, SCNPILOT_CONT_300_BF_Rhizobiales_62_47, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(56939..57754)
DNA (816bp) protein (272aa)
Methylase of chemotaxis methyl-accepting protein n=1 Tax=Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM B-2454 / MOB10) RepID=L0DGJ9_SINAD
methylase of chemotaxis methyl-accepting protein
Methylase of chemotaxis methyl-accepting protein {ECO:0000313|EMBL:AGA27928.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;"
SCN18_30_10_14_R2_B_scaffold_1282_53
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(57751..58809)
DNA (1059bp) protein (353aa)
response regulator receiver modulated CheB methylesterase (EC:3.1.1.61)
chemotaxis protein-glutamate methylesterase n=1 Tax=Schlesneria paludicola RepID=UPI000299FB38
Tax=RIFCSPLOWO2_12_FULL_Acidobacteria_67_14b_curated
SCN18_30_10_14_R2_B_scaffold_1282_54
SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(58812..59183)
DNA (372bp) protein (124aa)
histidine kinase n=1 Tax=Schlesneria paludicola RepID=UPI00029B1D79
response regulator receiver protein, CheY
Response regulator receiver protein, CheY {ECO:0000313|EMBL:ABF40529.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
SCN18_30_10_14_R2_B_scaffold_1282_55
SCNPILOT_EXPT_1000_BF_Afipia_62_8, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(59288..60901)
DNA (1614bp) protein (538aa)
PAS fold family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JPQ1_9BACT
PAS fold family {ECO:0000313|EMBL:EDY84820.1}; TaxID=382464 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales.;" source="Verrucomicrobiae bacterium DG1235.;"
methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor
SCN18_30_10_14_R2_B_scaffold_1282_56
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(60923..61405)
DNA (483bp) protein (161aa)
chemotaxis protein CheW n=1 Tax=Schlesneria paludicola RepID=UPI00029A4019
chemotaxis protein CheW
CheW protein {ECO:0000313|EMBL:ABF40527.1}; TaxID=204669 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Candidatus Koribacter.;" source="Koribacter versatilis (strain Ellin345).;"
SCN18_30_10_14_R2_B_scaffold_1282_57
SCNPILOT_CONT_500_BF_Actinomycetales_73_43, Cellulomonas, Micrococcales, Actinobacteria, Actinobacteria, Bacteria

Not on your lists

comp(61410..63698)
DNA (2289bp) protein (763aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;"
CheA signal transduction histidine kinase n=1 Tax=Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) RepID=D2R9I8_PIRSD
CheA signal transduction histidine kinase
SCN18_30_10_14_R2_B_scaffold_1282_58
unknown

Not on your lists

comp(64407..64646)
DNA (240bp) protein (80aa)

This feature has no annotations

SCN18_30_10_14_R2_B_scaffold_1282_59
unknown

Not on your lists

64889..65794
DNA (906bp) protein (302aa)

This feature has no annotations

Displaying items 31-60 of 77 in total

View Taxonomy