ggKbase home page

SCN18_30_10_14_R2_B_scaffold_2140_3

Organism: SCN18_30_10_14_R2_B_Bacteria_71_11

near complete RP 46 / 55 MC: 7 BSCG 45 / 51 MC: 4 ASCG 12 / 38 MC: 1
Location: 3490..4065

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Schlesneria paludicola RepID=UPI000299DD4E similarity UNIREF
DB: UNIREF100
  • Identity: 50.0
  • Coverage: 192.0
  • Bit_score: 167
  • Evalue 8.80e-39
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 50.6
  • Coverage: 180.0
  • Bit_score: 166
  • Evalue 7.20e-39
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADB18057.1}; TaxID=530564 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Pirellula.;" source="Pirellula staleyi (strain ATCC 27377 / DSM 6068 / ICPB 4128) (Pirella; staleyi).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.6
  • Coverage: 180.0
  • Bit_score: 166
  • Evalue 3.60e-38

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Singulisphaera acidiphila_SCNPILOT_SOLID2_TRIM150_Singulisphaera_70_9 → Singulisphaera → Planctomycetales → Planctomycetia → Planctomycetes → Bacteria

Sequences

DNA sequence
Length: 576
ATGGACGATCACCCGTGCCGCGACGCGGCCGCGCTCGCGGCGTTCCTCGCCGAACGGCGGCCGGCGCTACTGGCGTTCGTCGAGACCCGCCTCGGCCCGATGCTGCGCGCCAAGCTCGACCCGCAGGACGTGGCGCAGGAGGTCGCCGTGAAGGCACTCCGCGAGTTCGCCCGGCTCGACCCGCCCCCGCGCGACCCGTTCGCCTGGCTCTGCCACCTCGCCGAGCAGTGCGTGATCGACGGCCACCGCCACTTCGCCGCCGGCAAGCGCGCCGCCGCTCGGGAGCTGCCGGGCAACGTGCCGGCCGGCGACGCCAGCCAGGACTTGATCGCGCTCCTCGCCGGCAGCATGACGACGCCGACCCAGGCCGTCGTCCGCTCCGAGCGCCAGCGCCGGCTGGACGAGGCGGTCGGCCGGCTCCCCGCGGAGCACCGCGAGGCGCTGCGGCTGCGGTACGTCGAGGGGCTGGCGACGAAGGAGGTCGCCGGTCGGCTGGGGAAGACGGACGTGGCCACGCGGGTGCTCCTCACCCGCCTGGTGCAACGGCTCCAGGAGTTGCTCGGCGCGGGGGAGTGA
PROTEIN sequence
Length: 192
MDDHPCRDAAALAAFLAERRPALLAFVETRLGPMLRAKLDPQDVAQEVAVKALREFARLDPPPRDPFAWLCHLAEQCVIDGHRHFAAGKRAAARELPGNVPAGDASQDLIALLAGSMTTPTQAVVRSERQRRLDEAVGRLPAEHREALRLRYVEGLATKEVAGRLGKTDVATRVLLTRLVQRLQELLGAGE*