ggKbase home page

SCN18_30_10_14_R2_B_scaffold_3339_5

Organism: SCN18_30_10_14_R2_B_Bacteria_71_11

near complete RP 46 / 55 MC: 7 BSCG 45 / 51 MC: 4 ASCG 12 / 38 MC: 1
Location: comp(4994..6217)

Top 3 Functional Annotations

Value Algorithm Source
probable multidrug efflux pump, HlyD family protein n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C532A similarity UNIREF
DB: UNIREF100
  • Identity: 54.0
  • Coverage: 396.0
  • Bit_score: 374
  • Evalue 7.70e-101
RND family efflux transporter MFP subunit similarity KEGG
DB: KEGG
  • Identity: 40.7
  • Coverage: 403.0
  • Bit_score: 284
  • Evalue 3.00e-74
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADV82116.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.7
  • Coverage: 403.0
  • Bit_score: 284
  • Evalue 1.50e-73

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8 → SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8 → SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8 → SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8 → SCNPILOT_CONT_1000_P_Verrucomicrobia_61_8 → Verrucomicrobia

Sequences

DNA sequence
Length: 1224
ATGAGCACGAACTCATCCGCCACCCCGGCCGCGCCCCGGGCGGGGTGGCCGCGCGTGCTGGCCGTCGTCGCCGCCGTCGCGGCGGTGCTGGTCGGTGGGTTCGCACTCGGCACAGTGCCGCGGCTGCGCCAGGATCGGGCGGTCCGCACGCAGGCCGCGGCCGCCGCGGCCCGGCCCCCGCGGGTGACCGTGGCGACCGCGACCCGCGTGGCGCCGGACGCCGAGCGGGTGCTCCCGGGGAACTGCCTCCCGCTCACCGAGATTTCCGTCTTCCCGCGGACGACGGGCTACCTGACCAAGTGGACGGTGGACATCGGCGACCGGGTGAAGGCCGGGCAGGTACTCGCCGAAATCGCCACGCCGGAGGTCGACGCGCAACTGGACCAGGCCCGGGCGACGCTGGTGCAGGACCGGGCGAACCTCGTCCGCGCCCAGGCCCAGGAGGTGTACGCGAAGTCCGAAGAGAGGCGCGAGCAGAAGGCCTACGAGGGGGGAGCCGAGTCGAAGGATCTGTACGACAGCGCCGTCGCCAAGTCCCAGGTGGCGGCCGCCACCGTGCGGGCCAGCGAGGCGACGCTGCGGGTGGACGAGGCGAACATCCACCGGCTCGAAACCCTTCAGTCGTTCCAGACGGTGACGGCCCCGTTCGACGGCGTCATCACCGCCCGCAACATCGACCCCGGCGCGCTCGTCCAGGCCGACACGCCGGCGACCACGAAGGAGCTGTTCCACCTGATGCGGACGGACACGGTGCGGGTGTGGGTGAACGTCCCGCAGACGTTCTCGACGGCGGTGAAGGCCGGGCAGACGGCGAGCGTGTCGCGGCGCGAAGACCCGGGGCGCGCGTTCGCCGGCACGGTGGCGCGCACGGCCGACGCCCTCGACCCGAACACCCGCACACTGCTCACCGAGGTCCACGTCCCGAACCCCGACAACGCGCTGCGCCCGGGGATGTACCTTCAGGTCCGGTTCACGTTCGACCGCAACGTCTTCCCGGTCACGATCCCGTCGGCGGCGGTGGTGATCCGCAGCCGGGCGCCGACCGTCGGCGTCGTGGACGCGGGCAGTGCCGTCCGCTACCGCCCGGTCCAGCTCGGCCGCGACTACGGGGCCGAGGTCGAGGTCACGGTCGGGCTCGCACCGGGGGAGACGGTGGTCGTCCACCCGGGGGACGACCTGCCCGACGGGACCGTGATCGAGCCCGTCCCCGTCCCCGCGAAGTAG
PROTEIN sequence
Length: 408
MSTNSSATPAAPRAGWPRVLAVVAAVAAVLVGGFALGTVPRLRQDRAVRTQAAAAAARPPRVTVATATRVAPDAERVLPGNCLPLTEISVFPRTTGYLTKWTVDIGDRVKAGQVLAEIATPEVDAQLDQARATLVQDRANLVRAQAQEVYAKSEERREQKAYEGGAESKDLYDSAVAKSQVAAATVRASEATLRVDEANIHRLETLQSFQTVTAPFDGVITARNIDPGALVQADTPATTKELFHLMRTDTVRVWVNVPQTFSTAVKAGQTASVSRREDPGRAFAGTVARTADALDPNTRTLLTEVHVPNPDNALRPGMYLQVRFTFDRNVFPVTIPSAAVVIRSRAPTVGVVDAGSAVRYRPVQLGRDYGAEVEVTVGLAPGETVVVHPGDDLPDGTVIEPVPVPAK*