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SCN18_30_10_14_R2_B_scaffold_5471_4

Organism: SCN18_30_10_14_R2_B_Bacteria_71_11

near complete RP 46 / 55 MC: 7 BSCG 45 / 51 MC: 4 ASCG 12 / 38 MC: 1
Location: comp(1720..3441)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-H factor n=1 Tax=Gemmata obscuriglobus RepID=UPI00016C4345 similarity UNIREF
DB: UNIREF100
  • Identity: 45.5
  • Coverage: 303.0
  • Bit_score: 210
  • Evalue 3.50e-51
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 40.7
  • Coverage: 356.0
  • Bit_score: 196
  • Evalue 2.00e-47
RNA polymerase sigma factor, sigma-70 family {ECO:0000313|EMBL:AGA28464.1}; TaxID=886293 species="Bacteria; Planctomycetes; Planctomycetia; Planctomycetales; Planctomycetaceae; Singulisphaera.;" source="Singulisphaera acidiphila (strain ATCC BAA-1392 / DSM 18658 / VKM; B-2454 / MOB10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 40.7
  • Coverage: 356.0
  • Bit_score: 196
  • Evalue 9.70e-47

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Taxonomy

Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1722
GTGCCACACGGGACCGCGACCGGCATCCTCCGGCATCTGACGCGCACCGACCCGACGTCGGACCGGGAGCTGCTCGCCCGGTTTGCGGCCGCGCGGGACGACGCCGCGTTCGCCGAGCTGGTGCGCCGCCACGGCCCTCTCGTCCTGTCCGTCTGCCGGCGTGGCACCTGCAACCACCACGACGCCGACGACGCCTTCCAGGCAGTCTTCCTGACGCTCGCGCGCCGGGCCGCCGCCATCCAGAACCCGGACCTGCTCGGCGGCTGGCTCTACCAGGTGGCCGTCCGGGTCGCATGGCGGTCACGACGAAACGCGACGCGACGCCAGCGCTACGAGGTGCTGGCCGCGGAGGTGCCTGAGCCAGTGACGCCGGAGCCCCGGGAGCCCTGCGACCTCGGCTCGGTGCTGGACGAGGAGTTGGCCCGCCTGCCCGCGTGGCACCGGGAGGCTCTCGTCCTGTGCGGCCTGCAAGGACTCGCTCGTGCGGACGCGGCGGCCCGGCTCGGCATCCCGCTCGGGACCCTGGCCAGTCGACTCGACAAGGCTCGGAAGAAGCTGGCCGCGAGACTGGAACGGCTGGGAGTGACGCTGTCCGCGGCGGCCGTGCCCGCGGTCCTGGCGGACACCTACGCGGCCGTGCCAGCCTCCCTGCTCGACAGGACGTGCGGCTCAGTTGCTGGCCACGTTCCCGGGGCGGTGCTCCGACTCGCTCAAGGAGGGGTGAAGATGCGGACGGCGACCGTGATGTGGCTTCTGACCACTTCGTTCGCGCTGGTCGGAATCGGACTCGCCACCCGCCCCGGGGGAGGACAGACCCCGGTGGCCCCGCCCCCGCGCCCCGTGGCCGGCCCCGAGGTCCCGCCGAAGGAGGTGGTGCTGCGGGCGTGGGACGAGTCGGTCGCGGGTCTCAAGAGCGGGGTCGGGGAGGGGGTGTACGAGGTGTTGCGACCGGGCGAGAAACACGCCCGGTTCCGGGCCAAAGTCGTCCACTCCGGGTCGAAGTTCCGGGTCGAGCTGAACCTGCTGGACACCAACATGACCGACCCCTGGGCGCGGTGGCCGACGCTAGTTCACATCTACGACGGACGCACGCTGGGTTACTGCGGCGGCCGCAGCGGGCGGGACGGCGCCACGTTCGTTTCGACCCCGCCCGGGGACGTGTTCCGGAACGTCAACTCGATGTTCCAGCTCAACCCGGCGCGGCTGGCCCCCGTGGACCTGCCGGCGTTCGTTCGGAACCGACCAGGACTGGTGTTCGCCCGCGCGACGGACGGGGTGACCGCGACCGACCGGGACTTCGAGGCCGCGGGCGTCGCCTTGACACTCCGGTTCCCGCGGGCCACCGGGTACAACCCCGCCCTCTGCGAGGTCCGACGGGCCGGCAAAGGGTACAACGAGGTGAAGTCGGCGGTCTGGGACCGGTCGAACGGGGTGTGGTACGTCAAGCAGGTGGAGCGGACGTCCGAACCGGGGAATCTCGTCTGGGGGCACTCGGAGAAGCTGACCTACACCCGGTTCGAGGCGAACGTGGAGGTCGACCCGAGTCGGTTCCGGCTCCCGGCCCTGGGGCTGGTTAAGGGGGTGCGGTTGTCCTACCGGGACGCGGCTGGCGGGGTCGAGGTCTACACGTACACCCCGCCGGCGGAGGACCGCCCGGGCGACACGCTTCTGGACGGGCTGCGGCGGTTTCCCCGCCGAGACTTGGCCAACCCGGACGGGTAG
PROTEIN sequence
Length: 574
VPHGTATGILRHLTRTDPTSDRELLARFAAARDDAAFAELVRRHGPLVLSVCRRGTCNHHDADDAFQAVFLTLARRAAAIQNPDLLGGWLYQVAVRVAWRSRRNATRRQRYEVLAAEVPEPVTPEPREPCDLGSVLDEELARLPAWHREALVLCGLQGLARADAAARLGIPLGTLASRLDKARKKLAARLERLGVTLSAAAVPAVLADTYAAVPASLLDRTCGSVAGHVPGAVLRLAQGGVKMRTATVMWLLTTSFALVGIGLATRPGGGQTPVAPPPRPVAGPEVPPKEVVLRAWDESVAGLKSGVGEGVYEVLRPGEKHARFRAKVVHSGSKFRVELNLLDTNMTDPWARWPTLVHIYDGRTLGYCGGRSGRDGATFVSTPPGDVFRNVNSMFQLNPARLAPVDLPAFVRNRPGLVFARATDGVTATDRDFEAAGVALTLRFPRATGYNPALCEVRRAGKGYNEVKSAVWDRSNGVWYVKQVERTSEPGNLVWGHSEKLTYTRFEANVEVDPSRFRLPALGLVKGVRLSYRDAAGGVEVYTYTPPAEDRPGDTLLDGLRRFPRRDLANPDG*