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SCN18_30_10_14_R2_B_scaffold_7970_4

Organism: SCN18_30_10_14_R2_B_Bacteria_71_11

near complete RP 46 / 55 MC: 7 BSCG 45 / 51 MC: 4 ASCG 12 / 38 MC: 1
Location: comp(3016..3855)

Top 3 Functional Annotations

Value Algorithm Source
hypothetical protein n=1 Tax=Zavarzinella formosa RepID=UPI0003048D72 similarity UNIREF
DB: UNIREF100
  • Identity: 54.6
  • Coverage: 280.0
  • Bit_score: 285
  • Evalue 4.20e-74
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 49.3
  • Coverage: 270.0
  • Bit_score: 231
  • Evalue 2.00e-58
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABG05293.1}; TaxID=266117 species="Bacteria; Actinobacteria; Rubrobacteria; Rubrobacterales; Rubrobacterineae; Rubrobacteraceae; Rubrobacter.;" source="Rubrobacter xylanophilus (strain DSM 9941 / NBRC 16129).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 49.3
  • Coverage: 270.0
  • Bit_score: 231
  • Evalue 1.00e-57

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Taxonomy

Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 840
ATGACCGACGACGTGACCCGGCTGCGGCCGCGGATGATGTCCGTCGCGTACCGGATGCTCGGCAGCGTGGCCGACGCCGAGGACGCGGTGCAGGACGCCTTCCTCCGCTACCAGACGGCCGGCGGGGTGTCGTCCCCGGAGGGTTTCCTGGTCCGCACCACCACGCGCCTGTGCATCGACCGGCTGCGGGAGCGGCGCCGGCGAGAATACGTCGGCCCGTGGGTGCCGGAGCCGGTGGCCACGGGCGGTGGCGGGTCGCCGCTGGCCGAGTCGCTGTCGCAGGCGTTCCTCCTGCTGCTGGAACGGTTGTCGGCGGACGAGCGGGCGGCGTTCTTGCTGCGGACGGTGTTCGACTACGAGTACGCCGAGATCGGCGAAGTGGTCGGCAAGTCGGAGGCGGCCGTCCGGCAGCTCGTCAGCCGCGCCCGGGGGCGGCTCGGGCTGGACGGCGACCGGCGCTTCCCGGCCGCCCCGGCCCGCGCCGAGGGGCTGGCCGAGCGGTTCGTGGCCGCGTGCCGGGCCGGCGACGTGAAGGCGGTCGAGGCGATGCTCGCCGAGGACGCCGAGGTCCACTCGGACGGCGGCGGCAAGGTGTCGGCGGCGCGGGTGGTGATTCGCGGCCGGAACCGGGTGGCCCGGTTCGTCACCGGCGTGTTCCGCAAGCGGTGGCTTCAAGACGTCCACACGGCCACGGTGAACGGCGAGCCGGGACTGGTGTTCCGGTACGACGACGCGGTCGTGTCGGTGCTGTCGCTGCGGGTCGAGGGGGACGTGCGGGCGGTGTACATCACGGTCAACCCGGACAAGCTCGGCCGCTGGGCGGCGGCCGAGGTCGAGTAA
PROTEIN sequence
Length: 280
MTDDVTRLRPRMMSVAYRMLGSVADAEDAVQDAFLRYQTAGGVSSPEGFLVRTTTRLCIDRLRERRRREYVGPWVPEPVATGGGGSPLAESLSQAFLLLLERLSADERAAFLLRTVFDYEYAEIGEVVGKSEAAVRQLVSRARGRLGLDGDRRFPAAPARAEGLAERFVAACRAGDVKAVEAMLAEDAEVHSDGGGKVSAARVVIRGRNRVARFVTGVFRKRWLQDVHTATVNGEPGLVFRYDDAVVSVLSLRVEGDVRAVYITVNPDKLGRWAAAEVE*