ggKbase home page

SCN18_30_10_14_R2_B_scaffold_1868_3

Organism: SCN18_30_10_14_R2_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_63_12

near complete RP 50 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(2028..3044)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000255|HAMAP-Rule:MF_00059}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.9
  • Coverage: 338.0
  • Bit_score: 558
  • Evalue 5.70e-156
DNA-directed RNA polymerase subunit alpha n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RPOA_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 79.9
  • Coverage: 338.0
  • Bit_score: 558
  • Evalue 4.10e-156
DNA-directed RNA polymerase subunit alpha similarity KEGG
DB: KEGG
  • Identity: 79.6
  • Coverage: 338.0
  • Bit_score: 557
  • Evalue 2.60e-156

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11 → SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11 → SCNPILOT_CONT_1000_P_Alphaproteobacteria_64_11 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1017
ATGTTTCAAAAGAACTGGCAAGAACTGATCAAGCCCCAGAAGCTCAAGACCGAAGCCGGTCATGACGCGGGTAAAATCGCCACCATCACCGCCGAGCCGCTGGAACGCGGTTTCGGCCTGACCCTGGGCAATTCGCTGCGCCGCGTGCTCCTGTCGTCGCTGCAGGGCGCCGCCGTCACCTCGATCCAGATCGAAGGCGTGCTGCATGAATTCTCGTCCATCCAGGGCGTGCGCGAAGACGTCACCGACATCGTGCTGAATGTGAAGCAGATCGCGCTGCGCATGCATGCCGAAGGCCCCAAGCGGGTTTCGCTGCGCGCGTCCGGCCCGGGCGAAGTCAAGGCCGGCCAGATTCAGGGTTCGTCCGACATCGAAATCCTCAATCCCGACCTGGTACTCTGCACCTTGGACGAGAAGGTGGATTTCCGCATGGAACTCACCATCGCCACCGGCAAGGGCTATGTCCCGGCCGACCGCAACCGTCCGGAAGACGCGCCGATCGGCTTGATCCCGGTCGACAGCCTGTTCAGCCCGGTGAAGAAGGTCTCCTACAAGGTCGAGAACACCCGCGAGGGCCAGATCCTCGACTATGACAAGCTCACCCTCACGGTCGAAACCAATGGCGCGGTGACGCCGGATAACGCGGTGGCCTATGCCGCCCGCATCCTGCAAGACCAGCTCCAGGTCTTCATCAATTTCGAAGAGCCGCGCGAGCGCGTCGCCGAAGAGAGCAAGCCCGACCTGGCGTTCAATCCGGTGCTGCTCAAGAAGGTGGACGAGCTGGAACTCAGCGTCCGTTCGGCCAACTGCCTGAAGAACGACAACATCGTCTATATCGGCGACCTGATCCAGAAGACCGAAGCGGAGATGCTGCGCACCCCGAATTTCGGCCGCAAGTCGCTGAACGAGATCAAGGCGGTTCTCGCGGAGATGGGCCTGCATCTGGGCATGGAAGTGCCCGGCTGGCCGCCCGAGAATATCGAAGACCTCGCGAAGCGTTACGAAGATCAATATTGA
PROTEIN sequence
Length: 339
MFQKNWQELIKPQKLKTEAGHDAGKIATITAEPLERGFGLTLGNSLRRVLLSSLQGAAVTSIQIEGVLHEFSSIQGVREDVTDIVLNVKQIALRMHAEGPKRVSLRASGPGEVKAGQIQGSSDIEILNPDLVLCTLDEKVDFRMELTIATGKGYVPADRNRPEDAPIGLIPVDSLFSPVKKVSYKVENTREGQILDYDKLTLTVETNGAVTPDNAVAYAARILQDQLQVFINFEEPRERVAEESKPDLAFNPVLLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKAVLAEMGLHLGMEVPGWPPENIEDLAKRYEDQY*