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SCN18_30_10_14_R2_B_scaffold_4823_1

Organism: SCN18_30_10_14_R2_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_63_12

near complete RP 50 / 55 BSCG 51 / 51 ASCG 13 / 38
Location: comp(2..3457)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Short=RNAP subunit beta {ECO:0000255|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.5
  • Coverage: 1149.0
  • Bit_score: 1798
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RPOB_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 77.5
  • Coverage: 1149.0
  • Bit_score: 1798
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 77.5
  • Coverage: 1149.0
  • Bit_score: 1798
  • Evalue 0.0

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Taxonomy

SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → SCNPILOT_CONT_500_BF_Rhizobiales_64_17 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 3456
ATGACTCTCTCCTTCACCGGACGCAAAAGACTGCGGAAGAATTTCGGCAAGATCGCCGAGATCGCGCAAATGCCGAACCTCATCGAGGTTCAGCGCACTTCCTACGACCAGTTCCTGCAACTGGTGAAACCGGAAGGCGGCCGCGGTGACGAGGGGCTGGAAGCGGTGTTCCGCCAGGTCTTCCCGATCAAGGATTTCAGCGAATCCTCCCTGCTCGAATATGTCGATTACCATTTCGAGGAGCCCAAATACGACGTCGAGGAGTGCCAGCAGCGCTCCATGACGTTCGCGGCGCCGCTCAAGGTGACCTTGCGCCTCATCGTGTTCGATGTGGACCAGGAAACCGGCGCCAAGTCGGTCAAGGACATCAAGGAACAGGACGTCTATATGGGCGACGTCCCCTTCATGACCGAGAACGGCACCTTCGTCGTCAACGGCACCGAGCGCGTCATCGTTTCCCAGATGCATCGCAGCCCGGGCGTGTTCTTCGATCACGACAAGGGCAAGACTCATTCCTCGGGCAAGTTGCTGTTCGCCGCCCGCGTCATTCCCTACCGCGGCTCCTGGCTCGACTTCGAATTCGACGCCAAGGACATTATCCATGTCCGCATCGACCGGCGCCGCAAGCTGCCGGCGACGACCTTGCTCTATGCGCTGGGCATGACCCAGGAAGAGATCCTGGGCTATTTCTATTCCAAAATCGCCTTCAAGCGGCAAAAGGACGGTAGCTGGACCACGCCCTTGGACCAGGCCTGGATGCGCAACGCCAAATCCCAGTCGGATTGGAAGAATGCCAAGACCGGCGAGGTCATCCTGGAAGCGGGCGCCAAGATCACCGTGCGCGCCCTACGCAAGCTGCAGGAAGAAGGCGTCAAGTCGGTCGCCTTCGCCGAAGACGAACTGATCGGCCGCTACAGCGCGCTCGACATGGTCAATCCGGAAACCGGCGAAATCTATGTCGAGGCCGGTGACGAACTGACTGCGGACAATCTGGCGACCTTGAACGAAGCCGGCTTCCATGAAGTCGAAGTCATCAATGTCGACGGCATCACCACGGGCGCCTATGTCCGCAACACCCTGGCGGTGGACAAGAACCATTCGCGCGAAGCCGCGCTGATCGATATCTACCGCGTCATGCGCCCGGGCGAGCCGCCCACGCTCGACACGGCGGAAACCCTGTTCGGCCAGCTCTTCTTCGATCCGGAACGCTACGACCTTTCGGCCGTGGGCCGCGTCAAGATGAACATGCGCATGGGCCTGGACGCGCCCGACACGATGCGGGTGCTGCGCAAGGACGATATTCTCGCCATCCTCAAGGCGTTGGCGGAACTGCGCGATGGTCGCGGTGAAATCGACGACATCGACAATCTCGGCAACCGCCGGGTGCGTTCGGTGGGCGAATTGATGGAAAACCAGTTCCGCGTCGGCCTGCTTCGCATGGAGCGCGCCATCAAGGAGCGCATGAGCGCGGTCGATATCGACACGGTGATGCCGCACGATCTCATCAACGCCAAGCCGGTGGCGGCGGCGGTGCGCGAGTTCTTCGGCTCTTCGCAGTTGTCGCAATTCATGGACCAGCAGAACCCGCTGTCGGAACTGACCCACAAGCGTCGCATGTCGGCGCTTGGACCGGGCGGGTTGACCCGCGAGCGCGCCGGTTTCGAAGTGCGCGACGTGCATCCCACCCACTATGGCCGCATTTGCCCGATCGAGACGCCGGAAGGCCCGAACATCGGCCTGATCAATTCGCTCGCTACCTATGCGCGGGTGAACAAGTACGGCTTCATCGAAAGCCCCTACCGCAAGGTGGCGAACAAGCACCTGACGGACGAGGTGGTCTATCTGTCGGCGATGGAAGAGGCGAAGTACATGATCGCCCAGGCCAACGCGACCGTCGACGGCCGCATGCGCCTGACCGACGAACTCGTGTCCTGCCGCAAGGGCGGAAACTTCGTCATGACCACGCCCGACCAGGTGCAGTTCATCGACGTTTCGCCCAAGCAGCTGGTTTCGGTCGCCGCGGCCCTGGTGCCGTTCCTGGAGAATGACGACGCCAACCGCGCGCTGATGGGATCGAACATGCAGCGTCAGGCCGTGCCGTTGCTGCGCCCCGAAGCGCCGCTGGTCGGCACCGGCATGGAGGAAGTGGTGGCGCGGGATTCCGGCGCCGCCATCACCGCCCGCCGCACCGGCATCGTCGATCAGGTCGACGCCACCCGCATCGTGGTGCGCGCCACCGAGGAAACCGACCCCACCAAGCCGGGCATCGACATCTATCGCCTGCGCAAGTTCCAGCGCTCCAACGCTTCGACCTGCATCAACCAGCGTCCGCTGGTGAAGGTGGGCGATTTGGTGCACAAGGGCGATGTGATCGGCGACGGTCCCTCGACCCAGCTGGGCGAGCTGGCCCTGGGCAAGAATGCGCTCGTCGCCTTCATGCCCTGGAACGGCTACAATTTCGAAGACTCGATCCTGATTTCCGAGCGCATCGTGCGCGACGATGTCTTCACCTCGATCCATATCGAGGAATTCGAGACCATGGCCCGCGACACCAAGCTGGGCCCGGAGGAAATCACCCGCGACATTCCCAATGTCGGCGAGGAAAACCTCAAGAATCTCGACGAAGCCGGCATCGTCTATATCGGGGCCGAAGTGCAGGCGGGCGACATTCTGGTCGGCAAGGTGACGCCCAAGGGTGAAACCCCGATGACGCCGGAAGAAAAGCTGCTGCGCGCCATCTTCGGCGAAAAGGCGGCCGATGTCCGCGACACGTCCTTGCGCGTGCCGCCGGGCGTCACCGGCACCATCGTCGAAGTGCGGGTCTTCAACCGTCACGGCGTCGACAAGGACCAGCGCGCCTTGGCGATCGAGAAGGCGGAAGAAGAGCGCCTGGCGGAAGACCGGGACGACGAATTGTCGATCCTGGAGCGCAACATCTTCTCGCGCCTGTCGGAGATTCTGCTCAACAAGACCGCCGCGTCCGGCCCCAAGGGCATGGCCGCGGACACCAAGATCACGCAGGCCGTGCTGGACACGATCCCGCGCCATCAATGGTGGCAGATCGGGCTTCGCAACGAAAAGGCGATGGCCGAGATCGAGGGCCTTCGCCAGCAATATGACGACAGCAAGCAGCGCCTCGACAAGCGCTTCGCCGACAAGGTGGAAAAACTGCGTCGCGGCGACGAGCTGGCGCCGGGCGTGATGAAGATGGTCCGCGTCTTCGTGGCGGTGAAGCGCAAGCTGCAGCCGGGCGACAAGATGGCCGGCCGTCACGGCAACAAGGGCGTGATCAGCCGCATCGTGCCGATCGAGGACATGCCGCACCTGGAAGACGGCACCGCGGTGGACGTGGTGCTCAATCCGCTGGGTGTGCCTTCGCGCATGAATGTGGGTCAGATCCTGGAAACCCATCTGGGCTGGGCCTGCTCGGGCCTTGGCCGGCAGATCGGCGACATG
PROTEIN sequence
Length: 1152
MTLSFTGRKRLRKNFGKIAEIAQMPNLIEVQRTSYDQFLQLVKPEGGRGDEGLEAVFRQVFPIKDFSESSLLEYVDYHFEEPKYDVEECQQRSMTFAAPLKVTLRLIVFDVDQETGAKSVKDIKEQDVYMGDVPFMTENGTFVVNGTERVIVSQMHRSPGVFFDHDKGKTHSSGKLLFAARVIPYRGSWLDFEFDAKDIIHVRIDRRRKLPATTLLYALGMTQEEILGYFYSKIAFKRQKDGSWTTPLDQAWMRNAKSQSDWKNAKTGEVILEAGAKITVRALRKLQEEGVKSVAFAEDELIGRYSALDMVNPETGEIYVEAGDELTADNLATLNEAGFHEVEVINVDGITTGAYVRNTLAVDKNHSREAALIDIYRVMRPGEPPTLDTAETLFGQLFFDPERYDLSAVGRVKMNMRMGLDAPDTMRVLRKDDILAILKALAELRDGRGEIDDIDNLGNRRVRSVGELMENQFRVGLLRMERAIKERMSAVDIDTVMPHDLINAKPVAAAVREFFGSSQLSQFMDQQNPLSELTHKRRMSALGPGGLTRERAGFEVRDVHPTHYGRICPIETPEGPNIGLINSLATYARVNKYGFIESPYRKVANKHLTDEVVYLSAMEEAKYMIAQANATVDGRMRLTDELVSCRKGGNFVMTTPDQVQFIDVSPKQLVSVAAALVPFLENDDANRALMGSNMQRQAVPLLRPEAPLVGTGMEEVVARDSGAAITARRTGIVDQVDATRIVVRATEETDPTKPGIDIYRLRKFQRSNASTCINQRPLVKVGDLVHKGDVIGDGPSTQLGELALGKNALVAFMPWNGYNFEDSILISERIVRDDVFTSIHIEEFETMARDTKLGPEEITRDIPNVGEENLKNLDEAGIVYIGAEVQAGDILVGKVTPKGETPMTPEEKLLRAIFGEKAADVRDTSLRVPPGVTGTIVEVRVFNRHGVDKDQRALAIEKAEEERLAEDRDDELSILERNIFSRLSEILLNKTAASGPKGMAADTKITQAVLDTIPRHQWWQIGLRNEKAMAEIEGLRQQYDDSKQRLDKRFADKVEKLRRGDELAPGVMKMVRVFVAVKRKLQPGDKMAGRHGNKGVISRIVPIEDMPHLEDGTAVDVVLNPLGVPSRMNVGQILETHLGWACSGLGRQIGDM