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SCN18_25_8_15_R2_B_scaffold_11109_1

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Actinomycetales_Beutenbergia_73_13-related_73_8

near complete RP 44 / 55 MC: 1 BSCG 44 / 51 MC: 5 ASCG 12 / 38 MC: 2
Location: 402..1928

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor SigA n=1 Tax=Tetrasphaera elongata Lp2 RepID=N0DYZ5_9MICO similarity UNIREF
DB: UNIREF100
  • Identity: 72.5
  • Coverage: 517.0
  • Bit_score: 676
  • Evalue 1.50e-191
RNA polymerase sigma factor SigA {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1193181 species="Bacteria; Actinobacteria; Micrococcales; Intrasporangiaceae; Tetrasphaera.;" source="Tetrasphaera elongata Lp2.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 72.5
  • Coverage: 517.0
  • Bit_score: 676
  • Evalue 2.20e-191
RNA polymerase, sigma 70 subunit, RpoD subfamily similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 518.0
  • Bit_score: 667
  • Evalue 1.60e-189

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Taxonomy

Pseudonocardia dioxanivorans_SCN_Pseudonocardia_26x → Pseudonocardia → Pseudonocardiales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1527
GTGTCGGTCAGCACCACCACATCTTCTGCGGCCAGCTCCGCCAAGAAGACGGCCACCTCCAAGGCGGCCCCCACGCGTTCCCGCACCACCTCGCGGACCTCGGCGGCGACGACGCAGCCCGCGGCCGAGACGGTCGAGGAGACGCCCGCCACCCCGGCCCGGACGACCAAGGCGGCCGGCAAGACCGCCGCCTCGACCGACGCCGCTCCGACGAGGACGACCCGCTCGCGGAGCACGGCCTCGAAGTCGGCCACCTCGAAGACCGCGGCGGCGACGACCTCGGCGGCCGACGAGACCGAGGCGAGCGAGAAGGCGCCGGCCACCCGCACGCGCAAGCAGACGGCGAAGGCCCCGGCCAAGAGCCGGACGAAGGCGTCGGCCGCCAAGGCCACGGACGCGGATGACGCCGAGGAGCCGGAGATCGACGAGGAGGCCGTCGAGATCGAGGACGTCGAGGTCGAGAACGGCGAGACCGAGACCGACTCCACCGACGACTCGGACTCCCGCGAGGACGGCGAGGCCAAGCCCGCCGCGGCCGAGGAGGACGAGGAGGCCGCCGGCTTCGTCATCGGCTCGGACGACGACGACGCCCCCGCGCAGCAGGTCGTCACGGCCGGTGCGACGGCCGACCCGGTCAAGGACTACCTCAAGCAGATCGGCAAGGTCGCGCTGCTGAACGCCGAGCAGGAGGTCGAGCTCGCCAAGCGGATCGAGGCCGGCCTGTTCGCGGAGGAGAAGCTCGCCGAGGGTGGGCCGATGGAGTTCTCGCTGCGCCGGGAGCTGGAGTGGATCGCGGCCGACGGTCGTCGGGCGAAGAACCACCTGCTCGAGGCGAACCTGCGCCTCGTGGTCTCGCTGGCCAAGCGGTACACGGGCCGCGGGATGCTCTTCCTCGACCTGATCCAGGAGGGCAACCTCGGTCTCATCCGCGCGGTCGAGAAGTTCGACTACACCAAGGGCTACAAGTTCTCGACGTACGCCACCTGGTGGATCCGTCAGGCGATCACGCGCGCCATGGCCGACCAGGCCCGCACCATCCGCATCCCGGTGCACATGGTCGAGGTCATCAACAAGCTCGCCCGCGTCCAGCGGCAGATGCTCCAGGACCTGGGCCGCGAGCCCACGCCGGAGGAGCTGGCCAAGGAGCTGGACATGACGCCCGAGAAGGTCGTCGAGGTCCAGAAGTACGGCCGCGAGCCCATCTCGCTCCACACCCCCCTCGGCGAGGACGGGGACAGCGAGTTCGGTGACCTCATCGAGGACTCCGAGGCCATCGTCCCGGCCGACGCCGTCAGCTTCACGCTCCTGCAGGAGCAGCTCCACGCGGTGCTCGACACCCTGAGCGAGCGGGAGTCCGGCGTCGTCTCGATGCGGTTCGGCCTCACCGACGGACAGCCGAAGACGCTCGACGAGATCGGGAAGGTCTACGGCGTCACGCGCGAGCGGATCCGGCAGATCGAGTCCAAGACGATGTCGAAGCTGCGTCACCCCTCCCGCAGCCAGGTCCTGCGCGACTACCTCGACTGA
PROTEIN sequence
Length: 509
VSVSTTTSSAASSAKKTATSKAAPTRSRTTSRTSAATTQPAAETVEETPATPARTTKAAGKTAASTDAAPTRTTRSRSTASKSATSKTAAATTSAADETEASEKAPATRTRKQTAKAPAKSRTKASAAKATDADDAEEPEIDEEAVEIEDVEVENGETETDSTDDSDSREDGEAKPAAAEEDEEAAGFVIGSDDDDAPAQQVVTAGATADPVKDYLKQIGKVALLNAEQEVELAKRIEAGLFAEEKLAEGGPMEFSLRRELEWIAADGRRAKNHLLEANLRLVVSLAKRYTGRGMLFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLARVQRQMLQDLGREPTPEELAKELDMTPEKVVEVQKYGREPISLHTPLGEDGDSEFGDLIEDSEAIVPADAVSFTLLQEQLHAVLDTLSERESGVVSMRFGLTDGQPKTLDEIGKVYGVTRERIRQIESKTMSKLRHPSRSQVLRDYLD*