ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1675_14

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Devosia_62_26-related_62_9

near complete RP 49 / 55 BSCG 49 / 51 ASCG 13 / 38
Location: comp(11672..12208)

Top 3 Functional Annotations

Value Algorithm Source
Ribosome maturation factor RimM n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6Z7_PELHB similarity UNIREF
DB: UNIREF100
  • Identity: 55.8
  • Coverage: 181.0
  • Bit_score: 203
  • Evalue 1.80e-49
Ribosome maturation factor RimM {ECO:0000256|HAMAP-Rule:MF_00014, ECO:0000256|SAAS:SAAS00006662}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.4
  • Coverage: 178.0
  • Bit_score: 327
  • Evalue 8.70e-87
16S rRNA-processing protein RimM similarity KEGG
DB: KEGG
  • Identity: 55.8
  • Coverage: 181.0
  • Bit_score: 203
  • Evalue 5.00e-50

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Devosia_62_26 → Devosia → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 537
ATGGCAGCGCCAGACAACCGTATTCTGATGGGCAAGATCGGCGCCGCTCACGGCATCAAGGGTGAAGTGCGCATCACCACCTTTACCGGCGACCCCGAAGCCATTGCCAGCTACGGCCCGCTCGATACCGACCGCGAGGGCCTGACGGTCACCATCGAGACCGCGCGCCTCAACAAGAACGTGCTGGTCGCCCGCCTCAAGGACGTGCGCGATCGCGACGACGCCGAGCGCCTCAATGGCGTTTCCCTGTTCATCGACCGTAGCCGCCTGCCCGATCCGGACGACGAGGACGATTTCTATCACGCCGACCTCATCGGCCTTGATGCCCGGCTCGATACGGGCGTCAGCATCGGTGCGGTCTCGGCCCTTCTCAATTACGGCGCCGGCGACCTCATCGAAGTGCGCGACCCGCGCTCGGGCGACACTTTCCTCTATCCCTTCAGCAAGGCCGTGGTTCCCACCATTCGCATCGCCGAGGGTTTTCTCGTCATCGTTCCGCCGATCGAGGCCGACCCGGGCGAGGAAGAGCCGGACTGA
PROTEIN sequence
Length: 179
MAAPDNRILMGKIGAAHGIKGEVRITTFTGDPEAIASYGPLDTDREGLTVTIETARLNKNVLVARLKDVRDRDDAERLNGVSLFIDRSRLPDPDDEDDFYHADLIGLDARLDTGVSIGAVSALLNYGAGDLIEVRDPRSGDTFLYPFSKAVVPTIRIAEGFLVIVPPIEADPGEEEPD*