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SCN18_25_8_15_R2_B_scaffold_1967_16

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Devosia_62_26-related_62_9

near complete RP 49 / 55 BSCG 49 / 51 ASCG 13 / 38
Location: comp(15595..16113)

Top 3 Functional Annotations

Value Algorithm Source
Putative ECF sigma factor n=1 Tax=Rhizobium freirei PRF 81 RepID=N6V9A4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 56.3
  • Coverage: 174.0
  • Bit_score: 183
  • Evalue 1.10e-43
RNA polymerase sigma factor {ECO:0000313|EMBL:KFL32902.1}; TaxID=46914 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia riboflavina.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.5
  • Coverage: 172.0
  • Bit_score: 309
  • Evalue 1.80e-81
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 56.3
  • Coverage: 174.0
  • Bit_score: 181
  • Evalue 1.50e-43

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Taxonomy

Agrobacterium albertimagni_CN-SCN_Agrobacterium_19x → Agrobacterium → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 519
ATGGTTCCGCGAAAGCCCCGCAAATCTGAGGTCATGGATGAGCTTCCGGCTCTGCGCCGCTATGCGCTGAGCCTGACGCGGCGTCCGGCCGAAGCCGAGGACCTCGTCCACGACGCCCTCGTGCGGGCCATGGAGCGCAGCGCGACTTACAATCCGGCCGGCAATCTGCGAGGCTGGCTGATGTCCATCCTGCATAACCTGCATATCGATCGCCTTCGCTCCGGCGCCAGCGCCGCCGCGCGCGATCGGGACTTTGCAGCTCAGGCGACGGATACCCTTGCGCCCAACCAGCTCGACAGCGTTCGGCTCAATCAGGTGCGGCGCGCCTTCGATACGTTGCCCGAAGAGCAGCGTGAGGCGATGCATCTGGTGACCATAGAAGGCCTCAGCTACGAGGAGGCAGCGGTGGTCCTGGGTGTGCCTGCCGGAACGGTCATGTCGCGCATTTCGCGCGGACGTGAAGCCCTGCGGCGCTGGGAAAGCGGCCCATCACTGAAACTGGTCAAAGGAGGCGAATGA
PROTEIN sequence
Length: 173
MVPRKPRKSEVMDELPALRRYALSLTRRPAEAEDLVHDALVRAMERSATYNPAGNLRGWLMSILHNLHIDRLRSGASAAARDRDFAAQATDTLAPNQLDSVRLNQVRRAFDTLPEEQREAMHLVTIEGLSYEEAAVVLGVPAGTVMSRISRGREALRRWESGPSLKLVKGGE*