ggKbase home page

SCN18_25_8_15_R2_B_scaffold_702_18

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 27015..28046

Top 3 Functional Annotations

Value Algorithm Source
Regulatory protein GntR HTH n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XV64_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 68.8
  • Coverage: 343.0
  • Bit_score: 497
  • Evalue 6.60e-138
GntR family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 68.8
  • Coverage: 343.0
  • Bit_score: 497
  • Evalue 1.90e-138
Regulatory protein GntR HTH {ECO:0000313|EMBL:ACU06072.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.8
  • Coverage: 343.0
  • Bit_score: 497
  • Evalue 9.30e-138

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1032
ATGAAGTTCAGCAATTTTTTCGCTAATGTGCAGGTGGATGAGTTTTCTTCTACTCCCAAATATTTACAGCTTACCAATTCAATACTCAATGCCATTGAAGCAGGCAAATTGAAGAAAGATGATATCGTTCCTTCTATAAACGAATTAAGCTTTGAGCTTGAAGTATCAAGAGACACTGCCGAAAAGGGGTATAAGCATCTCAAAAAAATGGGGGTACTTGGTTCTGTGCCCGGTAAAGGCTATTATATAGTGAATGACAATATCAGGCAGTCTCAGCGGGTAATGCTGCTCTTTAACAAGCTGAGCGCTCACAAAAAAATAGTATATGATGCCTTTGTAGAAACACTTGGCGAAAATGTTGCCATTGACTTCTACATTTACAATAACGATTACGCGCTGTTCAAAAAGCTTATTACAAATGCAAAAGAAGACTATTCTCACTATGTGATCATTCCGCATTTTATTGAAGCAGGAGATAATGCGGATGACATCATCAATACTATTCCCAAACACAAATTAATATTGCTGGATAAAAGCCTGCCGGGCGTTGACGGAGAGTATGGAGGCGTATATGAAAATTTTGAGAAAGATATTTATAATGCGCTTGAACAGGCGCTGAAACCACTTGCCAAATATCATACGCTCAAAATAATTTTTCCTGAAAAAAGCTATTTCCCGCAGGAGATCATTAAAGGATTCAACAGGTTTTGCCATGAATATGCTTTCACCCATAAAATAGTGCATGATATATCTTCAGAACCCATTCACAGCGGCGAAGTATACATTAACTTAATGGAGGCTGATCTTGTAGCGCTGGTGGAAAGATTGATATCAATGAAGTTAAAAATAGGAAAAGATATTGGCGTAATTTCTTACAACGAAACCGTTATGAAAAAAATCATTCTTAACGGTATTACAACCATCTCAACAGACTTTTATGAAATGGGCGTACAGGCGGCCCAACTTGTATTGACGGGTGATAAGAAACATATTGAAGTACCATTCAAGCTTACATTGAGAGCTTCCCTGTAA
PROTEIN sequence
Length: 344
MKFSNFFANVQVDEFSSTPKYLQLTNSILNAIEAGKLKKDDIVPSINELSFELEVSRDTAEKGYKHLKKMGVLGSVPGKGYYIVNDNIRQSQRVMLLFNKLSAHKKIVYDAFVETLGENVAIDFYIYNNDYALFKKLITNAKEDYSHYVIIPHFIEAGDNADDIINTIPKHKLILLDKSLPGVDGEYGGVYENFEKDIYNALEQALKPLAKYHTLKIIFPEKSYFPQEIIKGFNRFCHEYAFTHKIVHDISSEPIHSGEVYINLMEADLVALVERLISMKLKIGKDIGVISYNETVMKKIILNGITTISTDFYEMGVQAAQLVLTGDKKHIEVPFKLTLRASL*