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SCN18_25_8_15_R2_B_scaffold_702_27

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: comp(40976..41713)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XT34_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 47.3
  • Coverage: 188.0
  • Bit_score: 178
  • Evalue 6.40e-42
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 47.3
  • Coverage: 188.0
  • Bit_score: 178
  • Evalue 1.80e-42
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU03595.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 47.3
  • Coverage: 188.0
  • Bit_score: 178
  • Evalue 8.90e-42

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Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 738
ATGAGACGCCTGCCGGCAGTGGCTCTGCAGGCGGGTGATATCACCCGCCTGAGAAAAATTGAAATGCGCCCTGCCGGTTGGGTTATAATTAGTTATCATTTTTTATTAAATTTACCTTACCAATCTTCAGAGAAATTGATAAGCCGTACTGTACCATATAATGAAGGGGAACTGCTTCAGGCGTTACGCCAGGGTAGCGAGCATGCTTTTACTATATTATACAAACACTACAGTGTTCCCTTATACTATAATATCCTGTCGCTGGTAAAAGACGAATGCACGGCAGAGGAACTGGTACAGGATGTGTTCTCGAAAATATGGAAGCAAAAAGCCTCCATTAATATAGAGAAAAGTTTTTCCGGGTATTTGTTTGTAACTGCGCGAAACAGGGTATATGACTTTTTTCAGCAGGTAAACCGGGACAAGGTATTGCATGCAAAAATAATGACAATGGCTTCAGAAGGGTACGACCATATTGAGCAGGCGCTTTTTGCAAAAGAAAACGCCGACCTTCTTCGCAAAGCAATTGATACCCTGCCTCCACAGCGCCGGAGGGCTTTTGAATTGTGTAAGCTGGAAGGGCTAACATACAGGCAGGCAAGTGAAGAAATGGGCATATCTTTATCAACCATTAAGGACCATATGGTCAATGCGTTCGATGCTATCCGTTTATATATCTCCGGGCATGTTGGCGTTGCAGGCATGCTGGCATTTTATTGCATTTGTAACCTCCCATGA
PROTEIN sequence
Length: 246
MRRLPAVALQAGDITRLRKIEMRPAGWVIISYHFLLNLPYQSSEKLISRTVPYNEGELLQALRQGSEHAFTILYKHYSVPLYYNILSLVKDECTAEELVQDVFSKIWKQKASINIEKSFSGYLFVTARNRVYDFFQQVNRDKVLHAKIMTMASEGYDHIEQALFAKENADLLRKAIDTLPPQRRRAFELCKLEGLTYRQASEEMGISLSTIKDHMVNAFDAIRLYISGHVGVAGMLAFYCICNLP*