ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1183_10

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: comp(10934..11515)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase ECF-type sigma factor n=1 Tax=Pedobacter sp. BAL39 RepID=A6EHF5_9SPHI similarity UNIREF
DB: UNIREF100
  • Identity: 34.8
  • Coverage: 181.0
  • Bit_score: 128
  • Evalue 4.60e-27
Putative RNA polymerase ECF-type sigma factor {ECO:0000313|EMBL:GAO41349.1}; TaxID=1220578 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter petaseus NBRC 106054.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 51.0
  • Coverage: 192.0
  • Bit_score: 209
  • Evalue 2.20e-51
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 34.9
  • Coverage: 175.0
  • Bit_score: 125
  • Evalue 1.10e-26

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 582
ATGCGCTGTTCTGACGATATACAATGTTGGCAGGAGTTCAGAAAAGGTAAAGAGAAAAGCCTGTTCTCTCTTTATGAAAAATATTATGGCGATCTGCTGCGGTACGGCTTGGGATTTACACCTGACCCGGAAATAGCAAGAGAGTATATCAACAGGGTCTTTCTTGATTTGTGGAACAAGAGAACGGTGCTCCCTGATGTGGATTATCCCAAAGCATACATTATTGCCTGTTATAAGAACAAGCTTTTTTACCGTAAAAAAAGGAAGGGAGCATTGAACCTCGTGTATGTGGACCCGGAGCATATTTCCGGTCACATTTCAGAGCAATCATATGAAGAAGTAATTATAGAGCTGCAGGAATTTGAGCAGCTCAAATCCCGTTTACAGCAGGCGCTGAATTTCCTGACCGAACGGCAGCGGACAATTCTCAAAATGCGGTATTTTGATGAAATGGCATTTGAGACCATTGCAAAAAAACTGGATGTATCAGTGCGCACCATATACAACAGTATTCATGAAAGTCTGAAGCAACTGCGCGGCGATGCGAAGGACAACAAAAACACCGGCAAAAATTCCATTTAA
PROTEIN sequence
Length: 194
MRCSDDIQCWQEFRKGKEKSLFSLYEKYYGDLLRYGLGFTPDPEIAREYINRVFLDLWNKRTVLPDVDYPKAYIIACYKNKLFYRKKRKGALNLVYVDPEHISGHISEQSYEEVIIELQEFEQLKSRLQQALNFLTERQRTILKMRYFDEMAFETIAKKLDVSVRTIYNSIHESLKQLRGDAKDNKNTGKNSI*