ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1011_27

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 34443..34991

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma-70 factor n=1 Tax=Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290) RepID=C6XVE1_PEDHD similarity UNIREF
DB: UNIREF100
  • Identity: 50.3
  • Coverage: 187.0
  • Bit_score: 185
  • Evalue 3.00e-44
RNA polymerase sigma-70 factor similarity KEGG
DB: KEGG
  • Identity: 50.3
  • Coverage: 187.0
  • Bit_score: 185
  • Evalue 8.40e-45
RNA polymerase sigma-70 factor {ECO:0000313|EMBL:ACU04007.1}; TaxID=485917 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pedobacter.;" source="Pedobacter heparinus (strain ATCC 13125 / DSM 2366 / NCIB 9290).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 50.3
  • Coverage: 187.0
  • Bit_score: 185
  • Evalue 4.20e-44

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 549
ATGCAGAATTATCAGTTATATACCGATGATGCCTTGCTCACGTTATTAAAAATAGATGACGGACAGGCTTTTAATGAAGTATATAACAGGTATTGGAAAATGCTTTTCAGTCTTGCATCATCCCGTCTCAGAAACACACATACCGCTGAAGATATAATACATGATGTTTTTGCCAGTCTCTGGAAAAATCGAAAAAATGCCGACATACATTCTCTTCAGCATTACCTTGCATCCTCTACACGCTACCTTGTATTTAAAGTAATTCGCAAAAATGCTCATGCGCATCAATATGCTCCCTCAGATCCTGATATAATATTTGAACCGGAAAATTCATTGCACAATAAATATCTCCTTGAATTTATAGCAAGAGAAGTGGATACATTGCCGGAGAAGTGCAGAATGGTTTTTAAATACAGTCGAGAAAAGGGTTTAACCAATAAGGAAATAGCATTGGAAATGAATATTACTTCAAAAACGGTAGAGAACCAGATTAACAAAGCCCTGCATCACCTGCGTTTTTCTATGAAGAAAATATTGATGATGTTGTAA
PROTEIN sequence
Length: 183
MQNYQLYTDDALLTLLKIDDGQAFNEVYNRYWKMLFSLASSRLRNTHTAEDIIHDVFASLWKNRKNADIHSLQHYLASSTRYLVFKVIRKNAHAHQYAPSDPDIIFEPENSLHNKYLLEFIAREVDTLPEKCRMVFKYSREKGLTNKEIALEMNITSKTVENQINKALHHLRFSMKKILMML*