ggKbase home page

SCN18_25_8_15_R2_B_scaffold_1651_7

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 16750..17352

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase specialized sigma subunit n=1 Tax=Formosa sp. AK20 RepID=M7N1K8_9FLAO similarity UNIREF
DB: UNIREF100
  • Identity: 44.4
  • Coverage: 180.0
  • Bit_score: 167
  • Evalue 7.00e-39
DNA-directed RNA polymerase specialized sigma subunit {ECO:0000313|EMBL:EMQ95634.1}; TaxID=1137281 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Formosa.;" source="Formosa sp. AK20.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 44.4
  • Coverage: 180.0
  • Bit_score: 167
  • Evalue 9.90e-39
sigma-70 family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 44.1
  • Coverage: 170.0
  • Bit_score: 152
  • Evalue 8.70e-35

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 603
ATGTCAAAAGCTGTAAGAAGCAAAAATTGTGTATCTTTTGCTCTTTTAATAATCATGCCTTCTGAAGCCCTGACCCACTCCTTAATTGAGGCTGTAAAAGCCAATGATGAAAAAGCATTGAAAACTTTGTATAATAACAATTATAGCAAAGTGCAGCAGTATGTGCTGCAAAACAGTGGCACGGAAGAACAGGCAAAAGATATTTACCAGGATGCTTTTATAACTACATGGAGAAATATTCAACTGGGCAAATTTAAACTGGTAGAAAACAGCTCTCTCAACGCTTACATTTTCCAGGTTGCGAAATACAAATGGCTCGATCATCTTCGCTCTTCTTCTGTTAAAAAAACCATAAGGTTTGAAACCGCACATGAAGACATGATGACCTTTGAAGATTTAACCGATATTGACACAGAACGCATAGCACTTATTAAGCAAAACTTTAAAAAGCTGGGCGATGCATGCAGGGATATGCTTACGCGGTTTTATTATCGCAGGCAGGCTTTAAAAGAAATTGCTGAGGCGCTGCGTATAACGGAAGAAACCGCGAAAAACAACAAATACAGGTGTATGGAGCGGTTAAGATCTATGATTAACCCTTAA
PROTEIN sequence
Length: 201
MSKAVRSKNCVSFALLIIMPSEALTHSLIEAVKANDEKALKTLYNNNYSKVQQYVLQNSGTEEQAKDIYQDAFITTWRNIQLGKFKLVENSSLNAYIFQVAKYKWLDHLRSSSVKKTIRFETAHEDMMTFEDLTDIDTERIALIKQNFKKLGDACRDMLTRFYYRRQALKEIAEALRITEETAKNNKYRCMERLRSMINP*