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SCN18_25_8_15_R2_B_scaffold_1385_14

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 12312..13313

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=700598 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Niastella.;" source="Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 85.0
  • Coverage: 333.0
  • Bit_score: 571
  • Evalue 4.90e-160
DNA-directed RNA polymerase subunit alpha n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TI98_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 85.0
  • Coverage: 333.0
  • Bit_score: 571
  • Evalue 3.50e-160
DNA-directed RNA polymerase subunit alpha similarity KEGG
DB: KEGG
  • Identity: 85.0
  • Coverage: 333.0
  • Bit_score: 571
  • Evalue 1.00e-160

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Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 1002
ATGGCCATTTTAAATTTCCAAAAGCCGGACAAAATCATACTTCAAAAAGCAAATGAATTTGAAGCATCTTTTGAATTCCGTCCGTTAGAGCCGGGTTATGGTGTTACTATCGGTAACTCACTCCGCAGGGTTTTATTGAACTCTCTTGAAGGTTATGCGATTATTGGAATTTTTATTGAAGGCGCTGAACATGAGTTCGCTACTCTGAAAGGAGTAACTGAAGATGTTACAGAAATTATATTGAACCTGAAACAGGTTCGTTTCAAAAAAATATTGGATACAGATATTAACCAGGAAAAACTCACTATTTCTATAAAAGGAAAAAGCGAATTTACTGCTGCCAATATCGGCGAAGCAACCGGTTCATTCCAGGTAATGAATCCGGAATTGCTGATCTGCACATTAGATCCTTCTGCTAAACTGAATATAGAGATCACTATCGGAAAAGGACGTGGTTATGTTCCTTCTGAAGATAATAAAGTGAAAGACGCACCATTCGGATATATTCCTACTGATGCCATTTTCACTCCTATTAAAAATGTAAAATACGGTATTGAAAACTTCCGTGTTGAACAAAGAACGGATTACGAAAAACTGTTGATGGATGTAACTACAGATGGTACTATCCATCCTGAAGAAGCTGTTAAACAGGCTTCACGTATCCTCATTCAGCATTTGATGATCATTACTGATGAAAACATAACATTTGACAGTAAAGAAGAGAAGAAAGATGATGTGGTTGATGAGCAGGTACTTCAGTTACGTAAAGTATTGAAAACGCCGCTTGAAGATCTTGACCTCAGCGTTCGTGCATTTAACTGCTTAAAAGCTGCCAAGATCAACAGCCTGAGCGAGTTGGTACAATACGAGCAGGAAGACCTGATGAAATTCCGCAACTTCGGTCAGAAATCACTGGCTGAAATTGAGCAGGTGTTGGGCGAAAGAAGCCTGCACTTCGGAATGGATCTGCAGAAGTTGGGATTGGATAAGGATGAGTTTTAG
PROTEIN sequence
Length: 334
MAILNFQKPDKIILQKANEFEASFEFRPLEPGYGVTIGNSLRRVLLNSLEGYAIIGIFIEGAEHEFATLKGVTEDVTEIILNLKQVRFKKILDTDINQEKLTISIKGKSEFTAANIGEATGSFQVMNPELLICTLDPSAKLNIEITIGKGRGYVPSEDNKVKDAPFGYIPTDAIFTPIKNVKYGIENFRVEQRTDYEKLLMDVTTDGTIHPEEAVKQASRILIQHLMIITDENITFDSKEEKKDDVVDEQVLQLRKVLKTPLEDLDLSVRAFNCLKAAKINSLSELVQYEQEDLMKFRNFGQKSLAEIEQVLGERSLHFGMDLQKLGLDKDEF*