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SCN18_25_8_15_R2_B_scaffold_3222_8

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 5657..6139

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TIN8_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 72.7
  • Coverage: 161.0
  • Bit_score: 241
  • Evalue 3.10e-61
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KIC92196.1}; TaxID=1463156 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Chitinophagaceae; Flavihumibacter.;" source="Flavihumibacter sp. ZG627.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.4
  • Coverage: 161.0
  • Bit_score: 250
  • Evalue 1.60e-63
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 72.7
  • Coverage: 161.0
  • Bit_score: 241
  • Evalue 8.70e-62

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Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 483
ATGACAGAAAAAGAGTACAATGAATGTGTGAACCTGTACGCAGACAATGTGTTTCGGTTTATCGTTAAAAATTTAAAGCATGAAGAAGACGCGAGGGATGTGGTGCAAACTGCTTTTGAAAAACTATGGCGTAACAGGGAGGAAGTAATATATGAGAAAAGTAAATCTTACCTGTTTACAGTTGCTTATAACCAGATGATTGATCATATAAGGAAAGGAAGCAGGGTCAGCCTGAAGGAAGATTTTAAAGATGATGTCAGTATCCAGCAGCCCAAACAGAACCTGAAAAAAATCCTGGAACACGCATTGTCTCGTTTAAATGAAACACAACGGTCGCTGGTGATGCTTAAGGATTATGAGGGATATTCTTATGAGGAAATAGGTAAAATTACAGGATTAAGTGAAAGCCAGGTAAAGGTATACCTGCACAGGGCAAGGCTTCAACTGAAAGAATACCTGGTTAAAATGGAGAACCTGGTTTAG
PROTEIN sequence
Length: 161
MTEKEYNECVNLYADNVFRFIVKNLKHEEDARDVVQTAFEKLWRNREEVIYEKSKSYLFTVAYNQMIDHIRKGSRVSLKEDFKDDVSIQQPKQNLKKILEHALSRLNETQRSLVMLKDYEGYSYEEIGKITGLSESQVKVYLHRARLQLKEYLVKMENLV*