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SCN18_25_8_15_R2_B_scaffold_5005_6

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 4336..4932

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Pedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 / LMG 10337 / NBRC 100064 / NCIMB 13643) RepID=F0S5D6_PEDSD similarity UNIREF
DB: UNIREF100
  • Identity: 45.0
  • Coverage: 191.0
  • Bit_score: 175
  • Evalue 4.40e-41
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 45.0
  • Coverage: 191.0
  • Bit_score: 175
  • Evalue 1.20e-41
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ADY52081.1}; TaxID=762903 species="Bacteria; Bacteroidetes; Sphingobacteriia; Sphingobacteriales; Sphingobacteriaceae; Pseudopedobacter.;" source="Pseudopedobacter saltans (strain ATCC 51119 / DSM 12145 / JCM 21818 /; LMG 10337 / NBRC 100064 / NCIMB 13643) (Pedobacter saltans).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 45.0
  • Coverage: 191.0
  • Bit_score: 175
  • Evalue 6.10e-41

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Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 597
TTGAATGCAACTACACCATATAATGAACAGGCTTTACTGCAAAAGCTGGCTGCTGGCGATGAAAGAGCATTTACGCAGTTGTATAATCATTATTATACGCAGGTAAAACTTGCTATCCAACGATTTGTAAAATCTCCCAACCTGACCGAAGACCTTGCTCAAGAAGTTTTTATTAAGATTTGGGATCACCATACCAAACTGTCCGGTGTGAATTCATTCCAGGCTTATCTCTTGACGATTACGCGCAATCATACGCTGAATTTTCTCAAACGGGCTGCACGCATTACAGAAGGCAAGACGGAAATTATCCGTCATGCCCGCCAATTATATTCCAACACCTCGGATGATGCAATTTTGAAGGAATACCTTAGTGAATTAAACAAAGTTTATGAGTCTCTCCCTGCACAAACCAGGGAAGTTTTTCGGTTGGTAAGAGGGGAGGAAAAGAGCTACGAAGAAGTGGCCGCCTTGCTGGGAATAAGCCGCAATACTGTAAAAAAACACATGGTGCATTCAAACAGGTCTTTCAGACAATCTCTTGAAAATGATTTAGGTATATCTCTCACCGTAGCGCTGTTCATTCTTTTTCAAAAATAA
PROTEIN sequence
Length: 199
LNATTPYNEQALLQKLAAGDERAFTQLYNHYYTQVKLAIQRFVKSPNLTEDLAQEVFIKIWDHHTKLSGVNSFQAYLLTITRNHTLNFLKRAARITEGKTEIIRHARQLYSNTSDDAILKEYLSELNKVYESLPAQTREVFRLVRGEEKSYEEVAALLGISRNTVKKHMVHSNRSFRQSLENDLGISLTVALFILFQK*