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SCN18_25_8_15_R2_B_scaffold_30329_1

Organism: SCN18_25_8_15_R2_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_40_9

near complete RP 52 / 55 MC: 1 BSCG 50 / 51 MC: 2 ASCG 13 / 38
Location: 2..583

Top 3 Functional Annotations

Value Algorithm Source
Putative lipopolysaccharide biosynthesis protein n=1 Tax=Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146) RepID=A4CKC4_ROBBH similarity UNIREF
DB: UNIREF100
  • Identity: 43.1
  • Coverage: 197.0
  • Bit_score: 159
  • Evalue 3.20e-36
lipopolysaccharide biosynthesis protein similarity KEGG
DB: KEGG
  • Identity: 43.1
  • Coverage: 197.0
  • Bit_score: 159
  • Evalue 8.90e-37
Putative lipopolysaccharide biosynthesis protein {ECO:0000313|EMBL:EAR15323.1}; TaxID=313596 species="Bacteria; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Robiginitalea.;" source="Robiginitalea biformata (strain ATCC BAA-864 / HTCC2501 / KCTC 12146).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 43.1
  • Coverage: 197.0
  • Bit_score: 159
  • Evalue 4.40e-36

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Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 582
TATAATGCGGTAAATGTTAACGATCTGTCTGCCGCCGTTCCCGTATCGTTGCCTGAAAATCAAATAAATCTATTAATGGTGGCAGCATTCCGTGATCAGAAAGATCAGCATACCTTAATTAAGGCTATGCAACAATTAGACGACAGGTATCATCTATACCTTGCCGGAGAAGGCGCAACACTTGAAGAATGCAGGCAGTTGGCTACAGACTTAAATGTTGAGCAACGGGTACATTTTATGGGCGTAAGAAAAGATGTACCAGGATTAATGAAAGCTGCGGATATTAATATCCTCTCGAGCCATTGGGAGGGATTATCCTGTGTGGTACTGGAAGCAATGGCTTCAGGAAAGCCATTTATTGGAACAGATATCTATGGAATTAAAGAAATGTTTAGGGATAATCCCTTTGCCCTATTCCAAACCGGAGATGTTGACGCTTTATCACAAAAAATAAGAAAAATAGCAGAGGATAAAGCGTTTGCTTTGTTGCAGAGTGAAACGAACTTTGAAACAGTTAAAAAATTTGATATTGATTTGATGACTGATCAGTATCTGGATATATATACACAATTGCTGAAGTAA
PROTEIN sequence
Length: 194
YNAVNVNDLSAAVPVSLPENQINLLMVAAFRDQKDQHTLIKAMQQLDDRYHLYLAGEGATLEECRQLATDLNVEQRVHFMGVRKDVPGLMKAADINILSSHWEGLSCVVLEAMASGKPFIGTDIYGIKEMFRDNPFALFQTGDVDALSQKIRKIAEDKAFALLQSETNFETVKKFDIDLMTDQYLDIYTQLLK*