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SCN18_25_8_15_R2_B_scaffold_11355_3

Organism: SCN18_25_8_15_R2_B_SCNpilot_BF_INOC_Bordetella_67_10-related_69_14

near complete RP 49 / 55 MC: 4 BSCG 51 / 51 MC: 5 ASCG 12 / 38 MC: 2
Location: comp(1817..2686)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QA94_BREDI similarity UNIREF
DB: UNIREF100
  • Identity: 97.6
  • Coverage: 289.0
  • Bit_score: 559
  • Evalue 1.60e-156
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.6
  • Coverage: 289.0
  • Bit_score: 559
  • Evalue 2.20e-156
RNA polymerase sigma-32 subunit RpoH similarity KEGG
DB: KEGG
  • Identity: 92.7
  • Coverage: 289.0
  • Bit_score: 533
  • Evalue 2.60e-149

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Taxonomy

Brevundimonas diminuta_SCNPILOT_CONT_300_BF_Brevundimonas_67_6 → Brevundimonas → Caulobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 870
CTGACGGTGATGTCGCCTGAACAGGGACTGTCCCGTTATCTTACGGAAATCCGTAAGTTTCCCATGCTGACCAAGGATGAGGAGTTCATGCTCGCCAAGCGGTGGAGCGAACACCAGGATCCTGAGGCCGCCCACCGTCTCGTGACCTCCCACCTTCGTCTCGTGGCCAAGATCGCCATGGGTTATCGCGGCTACGGCCTGCCGATCGGCGAGGTGATCTCCGAGGGCAACGTCGGCCTGATGCAGGCCGTCAAGAAATTCGATCCCGACAAGGGCTTCCGCCTGGCGACCTACGCCATGTGGTGGATTCGCGCCTCCATTCAGGAATACATCCTGCGCTCTTGGTCGCTCGTGAAGATGGGCACCACGGCCGCGCAGAAGAAGCTGTTCTTCAACCTGCGCAAGGCCAAGAGCCAGATCTCGGCCTTCGAGGACGGCGACCTGCATCCCGATCACGTCGAACAGATCGCCACCAAGCTGGGCGTGACCGAGCAGGACGTCATCGACATGAACCGTCGCCTGGGCGGCGACGCCTCCCTGAACGCGCCCCTGCGTTCGGACGGCGAAAGCGAATGGCAGGACTGGCTGGCCGACGACAACGCCGTCAGCCAGGAAACCGAGCTGGCCGAGAGCGAGGAGAAGTCGATCCGCATGGGCCTGCTGCAGGAGGCCATGGAAGAGCTGACCGACCGCGAGAAGCACATCCTGACCGAGCGTCGCCTCAAGGACGATCCCGTCACCCTCGAGGAACTCGCCGGCCAGTACGGCGTCAGCCGCGAGCGCGTCCGTCAGATCGAGGTCCGCGCCTTCGAAAAGCTGCAGAAGGCCATGCGCGCGGCCGCCGAAGAACGGAATCTGGTCGACGCCTGA
PROTEIN sequence
Length: 290
LTVMSPEQGLSRYLTEIRKFPMLTKDEEFMLAKRWSEHQDPEAAHRLVTSHLRLVAKIAMGYRGYGLPIGEVISEGNVGLMQAVKKFDPDKGFRLATYAMWWIRASIQEYILRSWSLVKMGTTAAQKKLFFNLRKAKSQISAFEDGDLHPDHVEQIATKLGVTEQDVIDMNRRLGGDASLNAPLRSDGESEWQDWLADDNAVSQETELAESEEKSIRMGLLQEAMEELTDREKHILTERRLKDDPVTLEELAGQYGVSRERVRQIEVRAFEKLQKAMRAAAEERNLVDA*