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SCN18_25_8_15_R2_B_scaffold_520

Search features with annotation key words

Displaying items 31-59 of 59 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCN18_25_8_15_R2_B_scaffold_520_31
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(35721..36311)
DNA (591bp) protein (197aa)
Uncharacterized protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWM4_ALIDB
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ADU99547.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_520_32
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(36896..38764)
DNA (1869bp) protein (623aa)
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC n=2 Tax=Alicycliphilus denitrificans RepID=E8TWM5_ALIDB
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC {ECO:0000256|HAMAP-Rule:MF_01102, ECO:0000256|SAAS:SAAS00084295}; Short=tRNA mnm(5)s(2)U biosynthesis bifunctional protein {ECO:0000256|HAMAP-Rule:MF_01102};; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
tRNA 5-methylaminomethyl-2-thiouridine biosynthesis bifunctional protein MnmC
SCN18_25_8_15_R2_B_scaffold_520_33
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(38777..39442)
DNA (666bp) protein (222aa)
Uncharacterized protein family UPF0126 n=1 Tax=Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC) RepID=E8TWM6_ALIDB
hypothetical protein
Uncharacterized protein family UPF0126 {ECO:0000313|EMBL:ADU99549.1}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_520_34
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(39514..39786)
DNA (273bp) protein (91aa)
Probable Fe(2+)-trafficking protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWM7_ALIDB
fe(ii) trafficking protein yggx
Probable Fe(2+)-trafficking protein {ECO:0000256|HAMAP-Rule:MF_00686, ECO:0000256|SAAS:SAAS00073862}; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_520_35
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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39912..40931
DNA (1020bp) protein (340aa)
Sulfate ABC transporter, periplasmic sulfate-binding protein n=2 Tax=Alicycliphilus denitrificans RepID=E8TWM8_ALIDB
sulfate ABC transporter substrate-binding protein
Sulfate ABC transporter, periplasmic sulfate-binding protein {ECO:0000313|EMBL:ADU99551.1}; Flags: Precursor;; TaxID=596153 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 18852 / JCM 14587 / BC).;"
SCN18_25_8_15_R2_B_scaffold_520_36
SCNpilot_P_inoc_Acidovorax_64_34, SCNpilot_P_inoc_Acidovorax_64_34, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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40997..41590
DNA (594bp) protein (198aa)
NADPH-dependent FMN reductase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037D0E09
Predicted flavoprotein {ECO:0000313|EMBL:GAD21628.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
FMN reductase
SCN18_25_8_15_R2_B_scaffold_520_37
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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41716..42690
DNA (975bp) protein (325aa)
ABC transporter substrate-binding protein n=1 Tax=Herbaspirillum seropedicae RepID=UPI0002F9DA9A
ssuA; alkanesulfonates ABC transporter periplasmic protein
Alkanesulfonates ABC transporter periplasmic protein {ECO:0000313|EMBL:EOA03618.1}; TaxID=864073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Herbaspirillum.;" source="Herbaspirillum frisingense GSF30.;"
SCN18_25_8_15_R2_B_scaffold_520_38
unknown

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42708..42815
DNA (108bp) protein (36aa)

This feature has no annotations

SCN18_25_8_15_R2_B_scaffold_520_39
Delftia acidovorans_SCNPILOT_CONT_500_P_Delftia_66_8.1, Delftia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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42825..44000
DNA (1176bp) protein (392aa)
Alkanesulfonate monooxygenase {ECO:0000256|HAMAP-Rule:MF_01229, ECO:0000256|SAAS:SAAS00023380}; EC=1.14.14.5 {ECO:0000256|HAMAP-Rule:MF_01229, ECO:0000256|SAAS:SAAS00023380};; FMNH2-dependent aliphatic sulfonate monooxygenase {ECO:0000256|HAMAP-Rule:MF_01229}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
alkanesulfonate monooxygenase (EC:1.14.14.5)
alkanesulfonate monooxygenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037CA9B2
SCN18_25_8_15_R2_B_scaffold_520_40
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44013..44876
DNA (864bp) protein (288aa)
sulfonate ABC transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035CC1EB
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:GAD21625.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
binding-protein-dependent transport system inner membrane protein
SCN18_25_8_15_R2_B_scaffold_520_41
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

44931..45740
DNA (810bp) protein (270aa)
Aliphatic sulfonates import ATP-binding protein SsuB {ECO:0000256|HAMAP-Rule:MF_01724}; EC=3.6.3.- {ECO:0000256|HAMAP-Rule:MF_01724};; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
taurine-transporting ATPase (EC:3.6.3.36)
sulfonate ABC transporter ATP-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000382F31A
SCN18_25_8_15_R2_B_scaffold_520_42
Acidovorax sp. KKS102_CN-SCN_Acidovorax_28x, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

45778..45993
DNA (216bp) protein (72aa)
transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00036D18D2
molybdenum-pterin-binding protein
Molybdenum-pterin-binding protein {ECO:0000313|EMBL:AFU45750.1}; TaxID=358220 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. KKS102.;"
SCN18_25_8_15_R2_B_scaffold_520_43
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

46071..47030
DNA (960bp) protein (320aa)
CysB family transcriptional regulator n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003673D06
Transcriptional regulator {ECO:0000313|EMBL:GAD21621.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
transcriptional regulator, LysR family
SCN18_25_8_15_R2_B_scaffold_520_44
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(47117..48712)
DNA (1596bp) protein (532aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00037A1C3C
Rhodanese-related sulfurtransferase {ECO:0000313|EMBL:GAD21614.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
rhodanese-like domain-containing protein
SCN18_25_8_15_R2_B_scaffold_520_45
SCNPILOT_CONT_750_P_Burkholderiales_64_62, Pandoraea, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(48709..49341)
DNA (633bp) protein (211aa)
UPI0003D3EBAE related cluster n=2 Tax=Acidovorax sp. MR-S7 RepID=UPI0003D3EBAE
Predicted metal-dependent enzyme of the double-stranded beta helix superfamily {ECO:0000313|EMBL:GAD21613.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cysteine dioxygenase
SCN18_25_8_15_R2_B_scaffold_520_46
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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49431..50450
DNA (1020bp) protein (340aa)
ABC transporter substrate-binding protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI00035D84BB
ABC-type nitrate/sulfonate/bicarbonate transport system, periplasmic component {ECO:0000313|EMBL:GAD21612.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
NMT1-like family protein
SCN18_25_8_15_R2_B_scaffold_520_47
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

50447..51466
DNA (1020bp) protein (340aa)
sulfonate ABC transporter permease n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000382C014
ABC-type nitrate/sulfonate/bicarbonate transport system, permease component {ECO:0000313|EMBL:GAD21611.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ssuC2; ABC-type sulfonate transporter, permease component
SCN18_25_8_15_R2_B_scaffold_520_48
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

51460..52269
DNA (810bp) protein (270aa)
ABC transporter n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003755FAF
ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component {ECO:0000313|EMBL:GAD21610.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
ABC transporter
SCN18_25_8_15_R2_B_scaffold_520_49
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

52316..53428
DNA (1113bp) protein (371aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI000371CB67
Uncharacterized protein {ECO:0000313|EMBL:GAD21609.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
cytochrome c class I
SCN18_25_8_15_R2_B_scaffold_520_50
SCN_Comamonadaceae_20x, SCN_Comamonadaceae_20x, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(53402..53941)
DNA (540bp) protein (180aa)
protein tyrosine phosphatase; K01104 protein-tyrosine phosphatase [EC:3.1.3.48] id=12550609 bin=BDI species=Acidovorax avenae genus=Acidovorax taxon_order=Burkholderiales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=BDI organism_group=Betaproteobacteria
protein tyrosine phosphatase
Tax=RIFCSPLOWO2_12_FULL_Burkholderiales_65_40_curated
SCN18_25_8_15_R2_B_scaffold_520_51
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

54154..55254
DNA (1101bp) protein (367aa)
alkanesulfonate monooxygenase (EC:1.14.14.5)
alkanesulfonate monooxygenase n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003658FE4
Coenzyme F420-dependent N5,N11-methylene tetrahydromethanopterin reductase {ECO:0000313|EMBL:GAD21608.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
SCN18_25_8_15_R2_B_scaffold_520_52
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

55254..56399
DNA (1146bp) protein (382aa)
hypothetical protein n=1 Tax=Acidovorax sp. MR-S7 RepID=UPI0003661449
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:GAD21607.1}; TaxID=1268622 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. MR-S7.;"
acd; acyl-CoA dehydrogenase
SCN18_25_8_15_R2_B_scaffold_520_53
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56420..56989
DNA (570bp) protein (190aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family n=1 Tax=Acidovorax sp. CF316 RepID=J0KGH7_9BURK
ABC transporter, substrate-binding protein, aliphatic sulfonates family {ECO:0000313|EMBL:EJE50333.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ABC transporter, substrate-binding, aliphatic sulfonates family protein
SCN18_25_8_15_R2_B_scaffold_520_54
SCN_Variovorax_21x, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

56986..57630
DNA (645bp) protein (215aa)
ABC transporter, substrate-binding protein, aliphatic sulfonates family n=1 Tax=Acidovorax sp. CF316 RepID=J0KGH7_9BURK
ABC transporter, substrate-binding protein, aliphatic sulfonates family {ECO:0000313|EMBL:EJE50333.1}; Flags: Precursor;; TaxID=1144317 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax sp. CF316.;"
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components
SCN18_25_8_15_R2_B_scaffold_520_55
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

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comp(57640..58545)
DNA (906bp) protein (302aa)
Lytic transglycosylase catalytic n=1 Tax=Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601) RepID=F4G6M9_ALIDK
lytic transglycosylase catalytic subunit
Lytic transglycosylase catalytic {ECO:0000313|EMBL:AEB85420.1}; TaxID=596154 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus denitrificans (strain DSM 14773 / CIP 107495 / K601).;"
SCN18_25_8_15_R2_B_scaffold_520_56
SCN_Thiobacillus_53x, SCN_Thiobacillus_53x, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

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59040..61322
DNA (2283bp) protein (761aa)
Type I secretion system ATPase n=1 Tax=Pelobacter propionicus (strain DSM 2379) RepID=A1ARK5_PELPD
Type I secretion system ATPase {ECO:0000313|EMBL:ABK99975.1}; Flags: Precursor;; TaxID=338966 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfuromonadales; Pelobacteraceae; Pelobacter.;" source="Pelobacter propionicus (strain DSM 2379).;"
type I secretion system ATPase
SCN18_25_8_15_R2_B_scaffold_520_57
SCNpilot_P_inoc_Thiobacillus_strain2_63_34, SCNpilot_P_inoc_Thiobacillus_strain2_63_34, Hydrogenophilales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

61325..62692
DNA (1368bp) protein (456aa)
Type I secretion adaptor protein (HlyD family) n=1 Tax=Ralstonia syzygii R24 RepID=G3A8J9_9RALS
Type I secretion adaptor protein (HlyD family) {ECO:0000313|EMBL:CCA87573.1}; TaxID=907261 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Ralstonia.;" source="Ralstonia syzygii R24.;"
Type I secretion adaptor protein (HlyD family)
SCN18_25_8_15_R2_B_scaffold_520_58
SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, SCNpilot_BF_INOC_Dechloromonas_67_13, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

62682..64367
DNA (1686bp) protein (562aa)
Outer membrane protein n=1 Tax=Variovorax sp. CF313 RepID=J3CQS8_9BURK
Protein CyaE {ECO:0000256|PIRNR:PIRNR001892}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
outer membrane efflux protein
SCN18_25_8_15_R2_B_scaffold_520_59
unknown

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65150..65386
DNA (237bp) protein (79aa)

This feature has no annotations

Displaying items 31-59 of 59 in total

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