ggKbase home page

SCN18_10_11_15_R3_B_scaffold_1398_8

Organism: SCN18_10_11_15_R3_B_SCN_pilot_derep_Thiobacillus_3_64_343

near complete RP 51 / 55 BSCG 51 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: 5842..7416

Top 3 Functional Annotations

Value Algorithm Source
peptidoglycan-binding protein LysM; K08307 membrane-bound lytic murein transglycosylase D [EC:3.2.1.-] id=12493495 bin=THIO_HI species=Thiobacillus thioparus genus=Thiobacillus taxon_order=Hydrogenophilales taxon_class=Betaproteobacteria phylum=Proteobacteria tax=THIO_HI organism_group=Betaproteobacteria similarity UNIREF
DB: UNIREF100
  • Identity: 99.4
  • Coverage: 524.0
  • Bit_score: 1040
  • Evalue 0.0
peptidoglycan-binding protein LysM similarity KEGG
DB: KEGG
  • Identity: 59.8
  • Coverage: 508.0
  • Bit_score: 589
  • Evalue 7.30e-166
Tax=GWE1_Thiobacillus_62_9_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 64.3
  • Coverage: 530.0
  • Bit_score: 666
  • Evalue 2.30e-188

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113 → SCNPILOT_SOLID2_TRIM150_Hydrogenophilales_64_113 → Hydrogenophilales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1575
TTGCCCGGAATCCAATTGGCTAAAATCAAATTGAATCTGCTCGGCGCGGCCATGCTTGCGCTGCTCTCCCTCCCGTCGGCGCATGCGGCCGATACCGGAGCGGGAATCCAGACGCTGGAATGGGACGCCGACCCGGACGGCGACGCGTCGGTCGGCGAAGCCACACCCGAAACCGCCAGTGCGGACGACGTCTGGGACCGTATCCGCAGCGGATTCAAGATCGACGGCGACACCTCGGGAAATCCGCTCGTCGCCCTGCATGAATCCTGGTACGCCGCCCGGCCGGACTACGTGCGCCGCATGCTCGATCGTTCGCGCCGCTACCTGTTCCATATCGTTCAGGAACTCGATCGCCGTGCCATGCCGATGGAAATCGCCCTGTTGCCGATGGTCGAAAGCGCCTTCAATCCCGCCGCCGAATCGCCTTCCGCGGCGTCCGGAATCTGGCAGTTCATCCCGTCCACCGGCCGTCACTATGGGCTCCGCCAGGACACCTGGTACGACGGCCGCCGCGACTTTACCGCCGCCACCGAAGCCGCGCTCGATTACCTGGGCAAGCTCTACCTGGATTTCGGCGACTGGAAACTGGCACTGGCGGCATACAACTGCGGCGAAGGGTGCGTCGCCCGCGCCATCGAAAAGAATGTCCAGCAAGGTCTGCCGACCAATTACGCCAGTCTGCCCCTGCCCAGTGAAACCCGGCATTACGTGCCCAAGCTCCTCGCCATCAGAAACCTGATCAGCCATCCGGAACACTACGGGATCGTCATCGACACGCTTCCCAACCAGCCCTATTTCAGACAGGTCATCCTGCGGTCCGCGAGCATGGACATCCGTTCCGCTGCCCGGCTGGCAGGCATCAGCAGCGATGAATTCATCGCCCTCAACGCCGCCTTTCCACGCAAGCTCATCCGCTCCGACGCGCCGGTCAACCTGCTGGTACCGGTTGCCAGAACCGACGCTTTCCAGCGCAACCTGCAAACGGGCAGCTGGGATTCCTGGCAACCTTATTCCGCCCAAAAAGGCGCGCGCCCCGCGGCCATTGCGAGACAATACGGAATCGATCTCGCCAGGCTGGAAGAACACAACCAGCTTCATGTGAAGCACGGCAAACTGGTGCGCGATCAGACCATACTGGTGCCCGTCAGGAACCACGGCGCGATCATGGAAAAAACCAGTACCGTCCCGCCCGCCGCCGCCGCGCCAACCCGTATCGAAGTACAACGAGGCGACACCTTGTTCAGCATCGCCCGCCGTTACGGTCTCACCGTCGCCGCGCTCGGCGACGCCAATCCCGGGCTTGATGACCGTCTCACGATCGGCCAGACCCTGCTGCTCCCCACGGGAGCGGGGGCGGACCAGGGAGACGCCGCCCCCCTCCAATCCGTTGCGTTCACGCCCCGCATCGCTACATCGGCCATCCCGTCACGCTATATCGTCCAGCAGGGCGACACGCTAAGTGCCATCGCTCGCCGCTTCGATGTCAGCCTGACCAATCTCAGGCGATGGAATCCCGTTTTCAGCAAAAACAGCACGGTCCATGCAGGGCAGCAGATGATCGTCAGGAACCCCTGA
PROTEIN sequence
Length: 525
LPGIQLAKIKLNLLGAAMLALLSLPSAHAADTGAGIQTLEWDADPDGDASVGEATPETASADDVWDRIRSGFKIDGDTSGNPLVALHESWYAARPDYVRRMLDRSRRYLFHIVQELDRRAMPMEIALLPMVESAFNPAAESPSAASGIWQFIPSTGRHYGLRQDTWYDGRRDFTAATEAALDYLGKLYLDFGDWKLALAAYNCGEGCVARAIEKNVQQGLPTNYASLPLPSETRHYVPKLLAIRNLISHPEHYGIVIDTLPNQPYFRQVILRSASMDIRSAARLAGISSDEFIALNAAFPRKLIRSDAPVNLLVPVARTDAFQRNLQTGSWDSWQPYSAQKGARPAAIARQYGIDLARLEEHNQLHVKHGKLVRDQTILVPVRNHGAIMEKTSTVPPAAAAPTRIEVQRGDTLFSIARRYGLTVAALGDANPGLDDRLTIGQTLLLPTGAGADQGDAAPLQSVAFTPRIATSAIPSRYIVQQGDTLSAIARRFDVSLTNLRRWNPVFSKNSTVHAGQQMIVRNP*