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SCN18_30_10_14_R4_P_scaffold_3778_7

Organism: SCN18_30_10_14_R4_P_SCNPILOT_CONT_750_BF_Rhodospirillales_68_10_70_11

partial RP 37 / 55 MC: 1 BSCG 40 / 51 MC: 2 ASCG 8 / 38
Location: 6847..7131

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoD n=1 Tax=Granulibacter bethesdensis (strain ATCC BAA-1260 / CGDNIH1) RepID=Q0BPS0_GRABC similarity UNIREF
DB: UNIREF100
  • Identity: 72.6
  • Coverage: 95.0
  • Bit_score: 136
  • Evalue 1.10e-29
RNA polymerase sigma factor RpoD {ECO:0000256|HAMAP-Rule:MF_00963}; Sigma-70 {ECO:0000256|HAMAP-Rule:MF_00963}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 77.9
  • Coverage: 95.0
  • Bit_score: 141
  • Evalue 3.60e-31
RNA polymerase sigma factor rpoD similarity KEGG
DB: KEGG
  • Identity: 72.6
  • Coverage: 95.0
  • Bit_score: 136
  • Evalue 3.10e-30

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Taxonomy

SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 → SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 → SCNPILOT_CONT_750_BF_Rhodospirillales_68_10 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 285
ATGGCGACGAAGCCCAGTGTAGCCGGCGATACGGTCACCGTCGAACAAGACGTCGAGACCACGCTGCTGGACGTCCAGTCCGCCGCGGTGAAGCGGTTGGTCGCGCGCGGCAAGGAGCGCGGCTACATCACCTTCGACGAGCTGAATGCCGTGCTGCCGCCCGACCAGAACAGCAGCGAGCAGATCGAGGACGTGATGGCCAATCTCTCCGGGATGGGTATCCAGGTCGTCGGAAGCGAGGACAACGAGGACGGCGAGGCCCCGGTCGCTAAGGCCGAGAAGGCC
PROTEIN sequence
Length: 95
MATKPSVAGDTVTVEQDVETTLLDVQSAAVKRLVARGKERGYITFDELNAVLPPDQNSSEQIEDVMANLSGMGIQVVGSEDNEDGEAPVAKAEKA