ggKbase home page

SCN18_10_11_15_R1_B_scaffold_237_17

Organism: SCN18_10_11_15_R1_B_SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7_63_17

near complete RP 50 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(14635..16056)

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretion system protein VirB10 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EN42_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 90.1
  • Coverage: 473.0
  • Bit_score: 833
  • Evalue 5.40e-239
Type IV secretion system protein VirB10 {ECO:0000313|EMBL:EYR82761.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 90.1
  • Coverage: 473.0
  • Bit_score: 833
  • Evalue 7.60e-239
conjugal transfer protein similarity KEGG
DB: KEGG
  • Identity: 44.7
  • Coverage: 423.0
  • Bit_score: 322
  • Evalue 1.50e-85

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1422
ATGAGCAAAGTCGATTTCGAACATCTGGACGGGCAAAGCAACGTCGCCAGCGACCGCAACGGGCGTCTCGGAAAGCTCGCCCTTCCCGTCCTGCTTCTCGTCGGGGCTGGCGTGCTCGCCTATGTCAACTGGCCGGCCGGCCCGCAAACCTCCAACCTCACCGAAGGCACCGGCGAGACCTTCGAGACATCCAACACCAGCATCCGCCAATTCCCTGACGAGCCGGTTAAACAGGCGGCCGATCCGAACCTCGTGCAAATCCCGGTCGAGGAAAAGAAGCCGGTGGACTCTGCCGCGGTCGACGTCACCGTCAACCCCGGCGATGACCTGGAAAAGCTGCGCCAGATCGAGGAAGAGCGTCGGCGCGCCGAAGAGGAGCGGCTTCGGGCGGAGGAGGCCCGCCGGCGTGCCGAAGAGGATGCGAGGCTTGCCGCGCTGGAGGCGAAGCGCCGGGAGGAAGAGGAGAAGGCACGCTGGGAACGGCTGCGCTCGGAACAGATCATCGTCGACGGTTCCGGCCGCGAAAGCCTGGCGGCCGGCGACCCGTCGGTAACGATCGCCGATGATGGCCAGCTCGTCGCCGTTCCCGGCGCGGAGAGCGACGCCAACAAGGCTTTCCTCGCCCAGTCGGAAAAGCAGACCGCCGGCGTCGTCAAGGCAACACGCTTCGACCGGACCGACGCGCTCGTCGCCCAGGGCACGATGATCCGGGGATTCCTGGAGACGGCGATCAACACCGATCTGCCGGGCATGGTGCGCGCCGTCGTGCGCGAGGATGTTCGCTCGCTCGATGGCGCTCGCATTCTCATTCCGAAGGGCTCCCGCCTGATCGGGGAATACAAGTCCGGCCTGGCGCGCGGGCAGAAACGCATCTTCGTCGTCTGGTCGCGTGTCATTCGCTCCGACGGCCTCTCCGCCGAGATCGCCTCGCCCGGCGCGGACCGGCTCGGCCGGGCCGGGCTGACCGGCGAGATCGACACGCATTTCTGGGAGCGTTTCGGCTCCGCGATCATGTTGTCGGTGATCGGCGGCGCGGCGGAATATGTCTCGGCGCTTGGCGACACCGCGACGGAAAGCGCCCGCTCCATCTCGACCGTCGATCCGATCACCGGCGCGGTCACGACAATCACCACCGAGCCGAGCCGCACGGCGGCCGAAGCCCGCTCGATCGCCGCCGAGAAGTCCTCGGCCATCCTGCAGGACATCGCCAACGAGGCGTTCAAGGAAAGCTCAAAGATTCCGCCGACCATCTATGTCGCCCAAGGGGAGTCGATCATCGTCTATCTGCGCCGCGACCTCGATTTTTCCGCCTTCTACGCCGACCCGGTCCGGCAAGAGATGATGCGGCTGAAGCGCGGTGGGCAAATCCGGCGCAATGTCGATCCGACGCCCTACTATCCGGTGGCCCCGGTTTACAAATGA
PROTEIN sequence
Length: 474
MSKVDFEHLDGQSNVASDRNGRLGKLALPVLLLVGAGVLAYVNWPAGPQTSNLTEGTGETFETSNTSIRQFPDEPVKQAADPNLVQIPVEEKKPVDSAAVDVTVNPGDDLEKLRQIEEERRRAEEERLRAEEARRRAEEDARLAALEAKRREEEEKARWERLRSEQIIVDGSGRESLAAGDPSVTIADDGQLVAVPGAESDANKAFLAQSEKQTAGVVKATRFDRTDALVAQGTMIRGFLETAINTDLPGMVRAVVREDVRSLDGARILIPKGSRLIGEYKSGLARGQKRIFVVWSRVIRSDGLSAEIASPGADRLGRAGLTGEIDTHFWERFGSAIMLSVIGGAAEYVSALGDTATESARSISTVDPITGAVTTITTEPSRTAAEARSIAAEKSSAILQDIANEAFKESSKIPPTIYVAQGESIIVYLRRDLDFSAFYADPVRQEMMRLKRGGQIRRNVDPTPYYPVAPVYK*