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SCN18_10_11_15_R1_B_scaffold_237_27

Organism: SCN18_10_11_15_R1_B_SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7_63_17

near complete RP 50 / 55 MC: 3 BSCG 51 / 51 MC: 2 ASCG 12 / 38 MC: 1
Location: comp(23892..24182)

Top 3 Functional Annotations

Value Algorithm Source
Type IV secretory pathway, VirB3 component n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EFD6_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.5
  • Coverage: 96.0
  • Bit_score: 181
  • Evalue 3.90e-43
Type IV secretory pathway, VirB3 component {ECO:0000313|EMBL:EYR82771.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.5
  • Coverage: 96.0
  • Bit_score: 181
  • Evalue 5.40e-43
type IV secretory pathway, VirB3-like similarity KEGG
DB: KEGG
  • Identity: 35.7
  • Coverage: 98.0
  • Bit_score: 67
  • Evalue 1.30e-09

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Taxonomy

SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → SCNPILOT_EXPT_1000_BF_Rhizobiales_63_7 → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 291
ATGCGTGATGACGCTCCCGATATCGAACCGCTCATCCAGCCGCTGACCAAACCGCCGATGTATTTCGGGGTCGACATCATCGTGTTCGTGGTGAACGGCATTTTCGGGATCGTCGTCTTCATTGCGTCGTCCAATTTTCTGGCGCCGCTGATCGTCCTGCCCGTCCATTTCATCGCCCTATACCTCTGCCAACGGGACATCCATATCGTCCGCGTGGTGCAGGTGTTCCTGTCGATGCGCCGGGCGATCCGCAACCGACGCTTCTGGAAAGCGGGGAGTTACGCCCCATGA
PROTEIN sequence
Length: 97
MRDDAPDIEPLIQPLTKPPMYFGVDIIVFVVNGIFGIVVFIASSNFLAPLIVLPVHFIALYLCQRDIHIVRVVQVFLSMRRAIRNRRFWKAGSYAP*