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SCN18_14_9_16_R1_B_scaffold_3738_5

Organism: SCN18_14_9_16_R1_B_Proteobacteria_68_9

near complete RP 42 / 55 MC: 1 BSCG 48 / 51 MC: 3 ASCG 12 / 38
Location: comp(4265..5209)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9G0E6_SORC5 similarity UNIREF
DB: UNIREF100
  • Identity: 62.4
  • Coverage: 194.0
  • Bit_score: 249
  • Evalue 3.80e-63
ECF family RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 62.4
  • Coverage: 194.0
  • Bit_score: 249
  • Evalue 1.10e-63
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 62.4
  • Coverage: 194.0
  • Bit_score: 249
  • Evalue 5.30e-63

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Taxonomy

SCNPILOT_SOLID_1_TRIM150_Rhodanobacter_66_29 → Rhodanobacter → Xanthomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 945
ATGCCGCTCGGTCGCATCGGGTTCGGGGCCAAATACGACGAGGCCACGTCCGCACTTACCCAAAGAAGTCCGCGGTCCTTTTGTCAGAGCCTCGTGGACACGGTATCGTCGCTTGCCGCTCTCGCTTTGGGCGGCACCGCCACGGCGGAAGAGGAGACTGAGTCGTTCTTCGGTCTGCTCTCCCTCGCCGGCGGTGATGGTGGCTCGAGCACTTCCGAATCGAGCCGCCCAGAGGTCTCGCCGGTCTCGCAAACCCGACCGGCAGGGCCGCCGCCAAAGCGCTCGCGCTCGTCGCCCGCGGGGGACCCTCCCCCAGGTTCGCCGAGAGCGACCGCGAAAGCTCGCTCCGCAACGATGAAACCAACGGACCGCGACCTCGTCGAGCGCGCGAAGAACCAGGGCGATGTAGAGGCCTTCGGTCAGCTCGTCCGCCGCCATCAGCAACGCATCCACCGCCTCGCCGTTCACATGCTCCGCGACCGGGCCGAGGCGGAGGACGTCGCGCAGGAAACGTTCATCCGAGCCTACCAAGCGCTGGCGCGCTTCGACGGCCGGAGCGAGCCGTACACCTGGTTCTATCGCATCGCGATCAACCTCTCCCTCAACCGGATCCGGTCGAGGAAGGCGTCGCGAACGACGCACGACACCGACGATCCCCGTCTCGACGGCATCCTCGTCGACCGGGGGCCCGGGACCGCCGACCCCGCGCTGAGCGCGCAGCGCCAAGAGCTCTACGAGACGCTCACGAAGGGGATCGACCAGCTCAGCGACACGCTGCGGACCACCCTCGTCCTCGTCTGCATCGACGGTCGATCGCACGAGGATGTCGCCCAGATCCTCGGAGCCCCGGAGGGAACGATCGCCTGGCGCATCCACGAGGCGCGGCGCAAGTTGAAAGACTTCATGCAGACCCGGGGCTTCGACCCCGAGGGAGATGGGACGTGA
PROTEIN sequence
Length: 315
MPLGRIGFGAKYDEATSALTQRSPRSFCQSLVDTVSSLAALALGGTATAEEETESFFGLLSLAGGDGGSSTSESSRPEVSPVSQTRPAGPPPKRSRSSPAGDPPPGSPRATAKARSATMKPTDRDLVERAKNQGDVEAFGQLVRRHQQRIHRLAVHMLRDRAEAEDVAQETFIRAYQALARFDGRSEPYTWFYRIAINLSLNRIRSRKASRTTHDTDDPRLDGILVDRGPGTADPALSAQRQELYETLTKGIDQLSDTLRTTLVLVCIDGRSHEDVAQILGAPEGTIAWRIHEARRKLKDFMQTRGFDPEGDGT*