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SCN18_14_9_16_R1_B_scaffold_3382_1

Organism: SCN18_14_9_16_R1_B_Proteobacteria_68_9

near complete RP 42 / 55 MC: 1 BSCG 48 / 51 MC: 3 ASCG 12 / 38
Location: 1..627

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54 dependent transcriptional regulator n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9EQP6_SORC5 similarity UNIREF
DB: UNIREF100
  • Identity: 44.4
  • Coverage: 243.0
  • Bit_score: 172
  • Evalue 3.00e-40
Sigma54 specific transcriptional regulator with PAS sensor, Fis family {ECO:0000313|EMBL:EYF00784.1}; TaxID=1192034 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Chondromyces.;" source="Chondromyces apiculatus DSM 436.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 46.1
  • Coverage: 228.0
  • Bit_score: 192
  • Evalue 3.90e-46
sigma-54 dependent transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 44.4
  • Coverage: 243.0
  • Bit_score: 172
  • Evalue 8.40e-41

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonas_67_13 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 627
GAGCAGGCGCGCGGCGGCGTCCTCTTCATCGACGAGATCGGAGACCTCCCGCGTGACGTGCAGGCCACGCTCCGTGAGACCCTCGGGAAGGTGCGCGACGTTCGCGTCGTCGCTGCGACGCGCCGCGACCTCGATCGAGACGTCGCACAGGGCCGCTTCGACGACGATCTCTTCTTCCTCCTCGCCGCTGGTCGCATCGAGCTGCCGGCGCTCCGCGATCGTGAGGGAGACGTCACGCTCCTCGCTCGTCACTTCTGGCAGGAGCTCGCTCCGTCCACCGGCGCCGCGACCGATCTGCCCGAGGACTTCCTCCCGCGCTTCGAGCACTACCCCTGGCCGGGCAACGTGCGCGAGCTTCGCAGCGCGGTCCTCGCGCGCATGACGATGGGTGAGCTCGGTCCGACGTATCGGTCCGACGAGGCGAAGCAGCAGGGGCTCGACTTCCTCAGCGCGGTCATCGAGGAGGATCTTCCGTTCCCGACCGCGCGCGAGCGCGTCGTCTCCGAGTTCGAGCGTCGTTACGTCGAGCGCGTGCTCGCGCGCCACAACGGCAACGTCACCCAGGCGGCACGCGCGAGCGGCGTCGCGCATCGGTACTTCCAGCTCGTGAAGGCGCGCCTCAAGTGA
PROTEIN sequence
Length: 209
EQARGGVLFIDEIGDLPRDVQATLRETLGKVRDVRVVAATRRDLDRDVAQGRFDDDLFFLLAAGRIELPALRDREGDVTLLARHFWQELAPSTGAATDLPEDFLPRFEHYPWPGNVRELRSAVLARMTMGELGPTYRSDEAKQQGLDFLSAVIEEDLPFPTARERVVSEFERRYVERVLARHNGNVTQAARASGVAHRYFQLVKARLK*