ggKbase home page

SCN18_14_9_16_R4_B_scaffold_726_10

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: comp(11251..12705)

Top 3 Functional Annotations

Value Algorithm Source
RND transporter n=1 Tax=Novosphingobium sp. B-7 RepID=UPI0003B32C0B similarity UNIREF
DB: UNIREF100
  • Identity: 69.9
  • Coverage: 481.0
  • Bit_score: 668
  • Evalue 3.10e-189
RND efflux system of outer membrane lipoprotein, nodT family {ECO:0000313|EMBL:GAO55213.1}; TaxID=1630648 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. MD-1.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 75.5
  • Coverage: 481.0
  • Bit_score: 709
  • Evalue 2.20e-201
RND efflux system outer membrane lipoprotein similarity KEGG
DB: KEGG
  • Identity: 53.5
  • Coverage: 471.0
  • Bit_score: 464
  • Evalue 3.30e-128

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1455
ATGAAGCGCGTCCTGCCCCTCGCCTCCGTCCTGCTGCTGGCGGGGTGCAACATGGCGCCGGCCTATCGTCCGCCGACCAATATCGCGATCCCGCCGTCGTTCAAGGAGGCGCCCGGCTGGGGTGTCGCGCAGCCGAGCGATGCCGCCGCACGCGGCGAATGGTGGGCGCTGTTCAACGATCCGGCGCTCGATGCGCTGGAACGCAAGGTGGTGGTCACCAACCAGAATGTCGCCGCCGCGCGCGGGGCCTATCAGGCGGCGCGCGCGCTGGTGATGGTCCAGCGCTCGGCCTTGTTCCCGACCGTCACCGGATCGGCCAACGGGCAGCATTCGCAGGCGTTTAGCGGCGGCTCCGCGACCAGCATCGGCGCCGGGACCGGCAATGGCGCCGGGGTCGGGAGCAACACCGTCACCACCTCGGGTTCGCGTTATGCGCTGAGCATCGGGGCGAGCTGGGAGCCCGATCTGTGGGGTCGGCTGGGCAATGCGGTATCGCAGGCCAAGGCCAATGCCGAGGCGAGCGCGGGCGATCTCGCCAATGCCACGCTCTCCGCGCAGGGCGAACTCGCCACCAATTACGTCGAATTGCGCGGGATCGATGCGCAGATCGTGCTGCTCGATGCGACGATCAAGGATTATCAGCGCGCGCTGACGATCACGACCAACAAGTACAAGGCCGGGACGGTCGCGCATTCCGACGTCTATCAGGCGCAGACCTCGCTTTCGAACGCGGTCGCCTCGCGGCAGGATCTCGATCGCCAGCGAGCGTTGCTCGAACATGCCATTGCGGTGCTGGCGGGGGAGAATCCCTCGACCTTCGCGATCCAGCCGGTCGCGTGGCAGCCGGTTGTCCCCACGGTGCCCGGCGTGCTGCCTTCGACCCTGCTAGAGCGCCGTCCGGACGTCGCCGCCGCCGAGCGGCGCGTGGCGGCGGCCAATGCCAATATCGGCATCCAGCGCGCTGCCTATTTCCCGCAATTCACCTTGTCGGGCAATGCCGGGACGAGCGGCAGCAAGGTCAGCCAGTTGTTTTCGGCCGCGACCAGCCTGTGGTCGTTCGGGCTCAGCGGGCTGATGACGCTGCTCGATTTCGGTGCGCGCCACGGGCAGGTGCTGCAGGCGCGCGGGCAATTCGATCAGGCGGCGGCGACCTATCGCCAGACCGCGCTCACCGCCTTCCAGCAGGTCGAGGACAATCTCGCCGCGACACGCGTGCTGGCCGATGTGACCGGCAGCCGGGCCGATGCCGCCGATGCCGCGGTCAAGGCGGAGGCGATTGCCAACAATCAATATCGCTCGGGGATCATTGATTATTCGCAGGTGATCGTTGCGCAGACCACCTCGCTCAGCGCGCGGCAGTCGCAGATTCAGGCGGTTATTAACCAGCAGACTGCGGTGGTTGCGCTGGTTCAGGCGATCGGTGGCGAGTGGAACGAGCCTGCCCCGGCCAAGTAA
PROTEIN sequence
Length: 485
MKRVLPLASVLLLAGCNMAPAYRPPTNIAIPPSFKEAPGWGVAQPSDAAARGEWWALFNDPALDALERKVVVTNQNVAAARGAYQAARALVMVQRSALFPTVTGSANGQHSQAFSGGSATSIGAGTGNGAGVGSNTVTTSGSRYALSIGASWEPDLWGRLGNAVSQAKANAEASAGDLANATLSAQGELATNYVELRGIDAQIVLLDATIKDYQRALTITTNKYKAGTVAHSDVYQAQTSLSNAVASRQDLDRQRALLEHAIAVLAGENPSTFAIQPVAWQPVVPTVPGVLPSTLLERRPDVAAAERRVAAANANIGIQRAAYFPQFTLSGNAGTSGSKVSQLFSAATSLWSFGLSGLMTLLDFGARHGQVLQARGQFDQAAATYRQTALTAFQQVEDNLAATRVLADVTGSRADAADAAVKAEAIANNQYRSGIIDYSQVIVAQTTSLSARQSQIQAVINQQTAVVALVQAIGGEWNEPAPAK*