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SCN18_14_9_16_R4_B_scaffold_1325_14

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: comp(16102..16806)

Top 3 Functional Annotations

Value Algorithm Source
DNA-binding protein n=1 Tax=Sphingomonas-like bacterium B12 RepID=UPI0003B6C42D similarity UNIREF
DB: UNIREF100
  • Identity: 80.0
  • Coverage: 230.0
  • Bit_score: 379
  • Evalue 1.80e-102
helix-turn-helix, type 11 domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 79.0
  • Coverage: 229.0
  • Bit_score: 362
  • Evalue 4.90e-98
Helix-turn-helix, type 11 domain protein {ECO:0000313|EMBL:ABQ66517.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 79.0
  • Coverage: 229.0
  • Bit_score: 362
  • Evalue 2.40e-97

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Taxonomy

SCNPILOT_EXPT_300_BF_Novosphingobium_63_58 → Novosphingobium → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 705
ATGCGGCGAGCCGACAGATTGTTCCAGATCATCCAGATCCTGCGGCGCTCGACCCGCCCGGTGACCGCCGCCGATATCGCGCGCGAGCTCGAAGTATCGCCGCGCACGGTCTATCGCGACATCGCCGATCTGATCGCGCAGCGCGTCCCCGTGCAGGGCGAGGCCGGGTTCGGCTATATCCTCGACGACGCCTTCGACATGCCCGCGCTGATGCTGACCCCCGATGAGATCGAGGCGGCGGTGCTCGGCGCGCAATGGGTGGCGGGGCGCGGCGATCCGGTGCTGGCCAATGCGGCGCGCGATCTGATCGCCAAGATCACCAGCGTCGTCCCCGAACGGCTGCGCCCGTTCATCGCCGATCCCGCGATCGGCACGCGCCCGGCGCGCGCGCTGGCGGTCGACGGGATCGATCTGGCGCGCACCCGCGAATGGATCCGCGAAGGCCGCAAGATCCGCATCGATTATCGTGACGAGCGCGGCGACCACAGCCTGCGCGTGATCTGGCCGGTCATCGTCGGCTTTTTCGACGAGAAGCGCATGCTCGCGGCGTGGTGCGAATTGCGGCAGGATTTCCGCCATTTCCGCGCCGACCGCGTGATCTCCGCCGAATTTCTCGACGATCGGTTCGACAGCCGGCCCGGCGCGCTTCGCCAGCGCTGGAAGCGCCATCTGGCCGACAAGCACGCCGCGCAGGCCGCCGCCTGA
PROTEIN sequence
Length: 235
MRRADRLFQIIQILRRSTRPVTAADIARELEVSPRTVYRDIADLIAQRVPVQGEAGFGYILDDAFDMPALMLTPDEIEAAVLGAQWVAGRGDPVLANAARDLIAKITSVVPERLRPFIADPAIGTRPARALAVDGIDLARTREWIREGRKIRIDYRDERGDHSLRVIWPVIVGFFDEKRMLAAWCELRQDFRHFRADRVISAEFLDDRFDSRPGALRQRWKRHLADKHAAQAAA*