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SCN18_14_9_16_R4_B_scaffold_4376_1

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: comp(1..1755)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321, ECO:0000313|EMBL:AJP72130.1}; Short=RNAP subunit beta {ECO:0000256|HAMAP-Rule:MF_01321};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_01321};; RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; Transcriptase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.3
  • Coverage: 585.0
  • Bit_score: 1085
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta n=1 Tax=Sphingomonas echinoides RepID=UPI00026CDB9E similarity UNIREF
DB: UNIREF100
  • Identity: 91.1
  • Coverage: 593.0
  • Bit_score: 1081
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta similarity KEGG
DB: KEGG
  • Identity: 92.3
  • Coverage: 585.0
  • Bit_score: 1085
  • Evalue 0.0

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonas_67_13 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1755
ATGGCAACCAAGGCGATCGAGGGCGCTACCACGCCCAAGCGGCGCATCCGCAAGGTGTTCGGCAACATCCACGAAGTGGTGCAGATGCCGAACCTCATCGAGGTCCAGCGCGAGAGCTACGAACAGTTCCTGCGCTCCAATCCCTCGATCGGCTATGTCTCCGGTCTGGAAAAGACGCTGCGCAGCGTGTTCCCGATCCGCGATTTCGCCGGCACCGCCGAGCTCGATTTCGTCAACTACGAACTCGAGCCGCCGAAGTTCGACGTCGAGGAATGCCGCCAGCGTGGCATCACTTATGCCGCGCTGATGCGCGTCACGCTGCGCCTGATCGTGTTCGAGGTGGATCCGGATACGGAAACCCGCTCGGTGCTCGATATCAAGGAGCAGGACGTCTACATGGGCGACATGCCGCTCATGACCGAGAACGGCACCTTCTTCATCAACGGCACCGAGCGCGTCATCGTCAGCCAGATGCACCGGTCGCCGGGCGTGCTGTTCGATCACGATCGCGGCAAGACCCACGCGTCGGGCAAATATCTGTTCGCGGCGCGCGTGATCCCGTATCGCGGCTCGTGGCTCGATTTCGAGTTCGACGCCAAGGACATCGTCAACGTCCGTATCGACCGTAAGCGCAAGCTGCCGGTGACGGCGCTGCTCTATGCGCTCGGCCTGAACTCCGAGGAAATCCTCAACCATTTCTACAACCGCCTCACCTTCGTCCGTGGCGAAGGCGGGTGGAAGATTCCGTTCCAGACCGAAAACTGGCGCGGCGTGAAGCCGATGTTCGACATCGTCGACGCCACGTCGGGCGAGATCGTCTTCCCGGCCGGGCAGAAGATCAGCCCGCGTTCGGCGAACAAGGCGGCGAAGGACGGCCTGACCGACCTGTTGATCCCGACCGAGGAAATCTTCGGCCGCTATTCGGCCTATGACCTGATCAACGAAGCGACCGGCGAGATTTACGTCGAGGCGGGCGACGAGATTTCGGTCGAGAACCTCGAGATGCTCGACAAGGCGGGCGTCGATCGCATCGAATTGCTCGATATCGATCACGTCGCGACCGGCCCGTGGATCCGCAACACGCTCAAGGCCGACAAGGCCGAGGAGCGCGAGCAGGCGCTGTCCGACATCTATCGCGTGATGCGCCCCGGCGAGCCGCCGACGCTGGAAACGGCCGAGGCTCTGTTCGCCGGCCTGTTCTTCGATCCGGACCGCTACGACCTGTCGGCGGTGGGCCGCGTCAAGCTCAACATGCGCCTCGATCTCGACACCGATGACAGCGTCACGACGCTGCGCACCGAGGATATCCTCGCGGTGGTCAAGACCCTCGTCGACCTGAAGGACGGCAAGGGCGAGATCGACGACATCGACAATCTCGGCAACCGCCGCGTGCGTTCGGTGGGCGAGCTGCTCGAAAACCAGTATCGCGTCGGCCTGCTGCGCATGGAGCGCGCGGTGAAGGAGCGCATGTCGTCGGTCGACGTGTCGACGGTGATGCCGAACGACCTGATCAACGCCAAGCCGGCGGTCGCCGCGGTGCGCGAATTCTTCGGCTCGTCGCAGCTGTCGCAGTTCATGGACCAGACCAACCCGCTCTCCGAAGTGACGCACAAGCGTCGCGTCTCGGCGCTCGGGCCGGGCGGTCTCACCCGCGAGCGCGCGGGCTTCGAGGTCCGCGACGTTCACCCGACCCATTATGGCCGTATCTGCCCGATCGAAACGCAGGAAGGCCCGAACAGCGGTCTGATCAACAGC
PROTEIN sequence
Length: 585
MATKAIEGATTPKRRIRKVFGNIHEVVQMPNLIEVQRESYEQFLRSNPSIGYVSGLEKTLRSVFPIRDFAGTAELDFVNYELEPPKFDVEECRQRGITYAALMRVTLRLIVFEVDPDTETRSVLDIKEQDVYMGDMPLMTENGTFFINGTERVIVSQMHRSPGVLFDHDRGKTHASGKYLFAARVIPYRGSWLDFEFDAKDIVNVRIDRKRKLPVTALLYALGLNSEEILNHFYNRLTFVRGEGGWKIPFQTENWRGVKPMFDIVDATSGEIVFPAGQKISPRSANKAAKDGLTDLLIPTEEIFGRYSAYDLINEATGEIYVEAGDEISVENLEMLDKAGVDRIELLDIDHVATGPWIRNTLKADKAEEREQALSDIYRVMRPGEPPTLETAEALFAGLFFDPDRYDLSAVGRVKLNMRLDLDTDDSVTTLRTEDILAVVKTLVDLKDGKGEIDDIDNLGNRRVRSVGELLENQYRVGLLRMERAVKERMSSVDVSTVMPNDLINAKPAVAAVREFFGSSQLSQFMDQTNPLSEVTHKRRVSALGPGGLTRERAGFEVRDVHPTHYGRICPIETQEGPNSGLINS