ggKbase home page

SCN18_14_9_16_R4_B_scaffold_2264_8

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: comp(6501..7916)

Top 3 Functional Annotations

Value Algorithm Source
Ribosomal protein S12 methylthiotransferase RimO {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00083292}; Short=S12 MTTase {ECO:0000256|HAMAP-Rule:MF_01865};; Short=S12 methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865};; EC=2.8.4.4 {ECO:0000256|HAMAP-Rule:MF_01865, ECO:0000256|SAAS:SAAS00179441};; Ribosomal protein S12 (aspartate-C(3))-methylthiotransferase {ECO:0000256|HAMAP-Rule:MF_01865}; Ribosome maturation factor RimO {ECO:0000256|HAMAP-Rule:MF_01865}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.2
  • Coverage: 450.0
  • Bit_score: 788
  • Evalue 3.60e-225
ribosomal protein S12 methylthiotransferase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B7685A similarity UNIREF
DB: UNIREF100
  • Identity: 87.6
  • Coverage: 443.0
  • Bit_score: 786
  • Evalue 1.30e-224
rimO; ribosomal protein S12 methylthiotransferase similarity KEGG
DB: KEGG
  • Identity: 85.0
  • Coverage: 447.0
  • Bit_score: 772
  • Evalue 4.20e-221

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1416
GTGGTTTCGGCAAGTTCAACCCGGATTAGCGGCATACTGGTAAAAGCGCGCGCGAATCGCTATGTGGCGCGCTTCCCTATGGCAACCAAACTCCCCTCCCCGCCCCGCGTGGGCATGGTTTCGCTCGGCTGTCCGAAGAACCTCGTCGACAGCGAACGCATCCTCACCCAGCTGCGCGCTGACGGCTATCAGATGTCGCCCGACTATGCCGGGGCCGATGTCGTGCTGGTCAACACCTGTGGCTTTCTCGATTCGGCCAAGGAGGAAAGCCTCGAGGCGATCGGCGAGGCGATCGCGGAAAACGGCCGCGTCATCGTCACCGGCTGCATGGGCAAGGAAGCCGAGGTAATCCGCGCGCGCTTCCCCGACGTGCTCGCGATCACCGGCGCGCATCAGTACGAGCAGGTCGTCGAGGCGGTGCATGAGGCCGCGCCGGCCAATATCTCGCCCTATGTCGATCTGATCCCCGACGCCGGGCTGAAGCTCACCCCGCGCCACTATAGCTATCTGAAGATTTCGGAGGGCTGCAATCACCGCTGCGCCTTCTGCATCATCCCCTCGCTGCGCGGCGATCTGGTCAGCCGTCGTCCCGATGCGATCCTGCGCGAAGCCGAGAAGCTGGTCGCGGCGGGGACCAAGGAATTGCTGGTCATCAGCCAGGATACCTCGGCCTATGGCGTCGACATGCGCCATAAATCGTGGCCGTGGCAGGGCGGCGAGGTGCGCGCGCATATGACCGACCTAGCGCGCGAGCTGGGCCGGATCGCGCCGTGGGTGCGGCTGCATTACGTCTATCCCTATCCGCACGTCGATCAGGTGATCCCGCTGATGGCGGAGGGGCTGGTGCTGCCCTATCTCGACATTCCGTTCCAGCACGCCAGCCGCGCGGTGCTCAAGGCGATGAAGCGCCCGGCGAACGAGGCCAAGGTGCTCGAACGGATTCGCGGCTGGCGCGAGATCTGCCCCGATATCGCGATTCGCTCGACCTTCGTCGTCGGCTTCCCCGGCGAGACCGAGGATGATTTCCGCTATCTGCTCGACTGGCTGGACGAGGCGCAGCTCGATCGCGTCGGCGCGTTCCGCTTCGAGCCGGTCGAGGGCGCTGCGGCCAATGCGTTGCCCGATCCGGTGCCTGAAGCGGTGAAAGAAGAACGCTACGCCCGCGTGATGGAAAAAACCGCTGCGATTTCTGCCGCCAAGCTGCAGGCGAAGATCGGCCGCACGCTGGAGGTGATCATCGACGCGGTAGGCGAAGACGGCGGCGCGACGGGTCGCTCGGCCGCCGATGCGCCCGATATCGATGGCGAGGTCCACCTGCGCGACGCGGGCAGCGTGGCGCCGGGCGATATCATCAGGGTGACGATCGAGGACGCCGACGACCACGATCTGTTCGGCGCGCCGGTGGCAAGCGCCTAA
PROTEIN sequence
Length: 472
VVSASSTRISGILVKARANRYVARFPMATKLPSPPRVGMVSLGCPKNLVDSERILTQLRADGYQMSPDYAGADVVLVNTCGFLDSAKEESLEAIGEAIAENGRVIVTGCMGKEAEVIRARFPDVLAITGAHQYEQVVEAVHEAAPANISPYVDLIPDAGLKLTPRHYSYLKISEGCNHRCAFCIIPSLRGDLVSRRPDAILREAEKLVAAGTKELLVISQDTSAYGVDMRHKSWPWQGGEVRAHMTDLARELGRIAPWVRLHYVYPYPHVDQVIPLMAEGLVLPYLDIPFQHASRAVLKAMKRPANEAKVLERIRGWREICPDIAIRSTFVVGFPGETEDDFRYLLDWLDEAQLDRVGAFRFEPVEGAAANALPDPVPEAVKEERYARVMEKTAAISAAKLQAKIGRTLEVIIDAVGEDGGATGRSAADAPDIDGEVHLRDAGSVAPGDIIRVTIEDADDHDLFGAPVASA*