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SCN18_14_9_16_R4_B_scaffold_4655_4

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: 2938..3507

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor n=1 Tax=Sphingomonas sp. S17 RepID=F3WWJ7_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 68.3
  • Coverage: 189.0
  • Bit_score: 253
  • Evalue 9.20e-65
RNA polymerase sigma factor {ECO:0000256|RuleBase:RU000716}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.3
  • Coverage: 189.0
  • Bit_score: 253
  • Evalue 1.30e-64
RNA polymerase sigma factor similarity KEGG
DB: KEGG
  • Identity: 66.8
  • Coverage: 187.0
  • Bit_score: 250
  • Evalue 2.90e-64

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonas_67_13 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
GTGTTGACTCCTTCCGACCAGGTGGCGGCGCGGACGCATTTGGCCGAGGCTTTGCTGCGGACCGGCGAGGAGGACCGCTCGGCGCTCCAGGAAGTATATCGGCTGACATCCGCGAAGCTATTCGGGATTTGCCTGCGTATCTGTGGAGATCGCAGCAGCGCCGAGGACGTGTTGCATGAAGTGTATCTCACGATCTGGAAGCGGGCCGGCGCGTTCGAGCCCGGCCGGGCGAGCCCGATCTCCTGGCTTGCGACAATCGCACGCAACCGGGCGATCGATTGGGTTCGGGCGCGCGGAGCGCGGCCGTCCGATCCGATCGAGGAGGCCGACAACGTGCCTGACGCCTCGCCCGATCAATTGACGGTCATTGAGCGCGACGAGCAATCGCAACGCCTGCACGACTGCCTCGATGCCCTGGATGAGCGCGCGCGCGACGCCATACGAACCGCCTTTTTCGATGGCGTCACCTATGCCGAGCTTGCCGAGCGCAAGGGCCTCCCATTGCGTACGATGAAAAGCATCGTGCGCCGGGGGCTGCTTCAACTAAGAGGATGCGTCGATGGCGACTGA
PROTEIN sequence
Length: 190
VLTPSDQVAARTHLAEALLRTGEEDRSALQEVYRLTSAKLFGICLRICGDRSSAEDVLHEVYLTIWKRAGAFEPGRASPISWLATIARNRAIDWVRARGARPSDPIEEADNVPDASPDQLTVIERDEQSQRLHDCLDALDERARDAIRTAFFDGVTYAELAERKGLPLRTMKSIVRRGLLQLRGCVDGD*