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SCN18_14_9_16_R4_B_scaffold_5958_4

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: 2449..2799

Top 3 Functional Annotations

Value Algorithm Source
RND family efflux transporter, MFP subunit n=1 Tax=Novosphingobium sp. AP12 RepID=J3AQ58_9SPHN similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 117.0
  • Bit_score: 155
  • Evalue 2.10e-35
RND family efflux transporter, MFP subunit {ECO:0000313|EMBL:EJL35034.1}; Flags: Precursor;; TaxID=1144305 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. AP12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.1
  • Coverage: 117.0
  • Bit_score: 155
  • Evalue 3.00e-35
hemolysin D similarity KEGG
DB: KEGG
  • Identity: 65.0
  • Coverage: 120.0
  • Bit_score: 146
  • Evalue 3.60e-33

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 351
ATGAGGAAATTCGCGCCTGCCTTTGCGGCCGTGCTGCTCCTTTCCGCCTGCGGCCAGGGTGCTGCACCGCAGCAGCAGGGACCGGCCGAGGTGAGCGTCGTCACCGTGCGGACCCAGCCGGTGACGCTGACCACCGAGCTGCCGGGCCGCACCGTGGCCTATGAAAGCTCCGATGTGAGGCCGCAGGTCAACGGCATCATCCTCGCGCGGTTGTTCGAGGAAGGGGATCAGGTGCGCGCGGGCCAGCCGCTCTATCGCATCGATCCGCAGCCCTATCAGGCGGCGGCGGCGCGCGCGCGGGCCGCGCTGGGCCGCGCGCGTGCGGCGCTCGCGTCGAACGGCGCGCTCGAG
PROTEIN sequence
Length: 117
MRKFAPAFAAVLLLSACGQGAAPQQQGPAEVSVVTVRTQPVTLTTELPGRTVAYESSDVRPQVNGIILARLFEEGDQVRAGQPLYRIDPQPYQAAAARARAALGRARAALASNGALE