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SCN18_14_9_16_R4_B_scaffold_13949_1

Organism: SCN18_14_9_16_R4_B_SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9_67_9

near complete RP 44 / 55 MC: 1 BSCG 47 / 51 MC: 1 ASCG 9 / 38 MC: 2
Location: 2..1027

Top 3 Functional Annotations

Value Algorithm Source
Transcription termination factor Rho {ECO:0000256|HAMAP-Rule:MF_01884}; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_01884};; ATP-dependent helicase Rho {ECO:0000256|HAMAP-Rule:MF_01884}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.0
  • Coverage: 341.0
  • Bit_score: 607
  • Evalue 8.30e-171
transcription termination factor Rho n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B5DCF5 similarity UNIREF
DB: UNIREF100
  • Identity: 95.3
  • Coverage: 341.0
  • Bit_score: 642
  • Evalue 1.30e-181
rho; transcription termination factor Rho similarity KEGG
DB: KEGG
  • Identity: 88.0
  • Coverage: 341.0
  • Bit_score: 607
  • Evalue 1.70e-171

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Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonadales_67_9 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1026
GACATTTATGTCTCGCCCAATCAGGTCCGCAAATTCGGGCTGCGCACCGGCGACACCGTGGAAGGCGAGATTCGCGCGCCCAAGGATGGCGAGCGTTATTTCGCGCTGACCCGGCTGATCAGCGTCAATTTCGAGGAACCCGAAAAGGTTCGCCACCGCGTCAATTTCGACAATCTCACCCCGCTCTATCCCGACGAGCGGCTCAAGATGGAAATCGAAGACCCGACGATCAAAGACAAATCGGGCCGCGTGCTCGATGTCGTCGCCCCGATCGGCAAGGGCCAGCGCTGCCTGATCGTCGCCCCGCCGCGCGTCGGCAAGACGATCATGATGCAGAATATCGCGCGCGCGATCAGCCACAATCACCCCGAGGTGTTCCTGATCGTCCTGCTGATCGACGAGCGCCCCGAAGAAGTCACCGACATGCAGCGCACGGTGAACGGCGAGGTCGTCTCCTCGACCTTCGACGAGCCGGCCACGCGCCACGTGCAAGTCGCTGAAATGGTGATTGAAAAGGCCAAGCGCCTGGTCGAGCACAAGAAGGATGTGGTGATCCTGCTCGACAACATCACCCGTCTCGGCCGCGCCTATAACACCGTCGTTCCCTCGTCGGGCAAGGTGCTGACCGGCGGTGTCGACGCCAATGCGTTGCAGCGCCCGAAGCGCTTCTTCGGCGCGGCGCGCAACATCGAAGAGGGCGGCTCGCTCACCATCATCTCCACCTCGCTGATCGACACCGGCAGCCGGATGGACGAGGTGATCTTCGAAGAGTTCAAGGGCACCGGCAACGCCGAAATCGTGCTCGACCGCAAGATCGCCGACAAGCGCATCTTCCCGGCGATCGATGTCGGCAAGTCCGGCACGCGCAAGGAAGAGCTGCTGGTCGAGAAGGGCACGCTCAGCAAGATGTGGGTGCTGCGCCGCATCCTGATGCAGATGGGGACCGTCGATGCGGTGGAGTTCCTGCTCGGCAAGATGAAGGATTCGAAGACCAACGAGGACTTCTTCGAGAGCATGAATCAATAA
PROTEIN sequence
Length: 342
DIYVSPNQVRKFGLRTGDTVEGEIRAPKDGERYFALTRLISVNFEEPEKVRHRVNFDNLTPLYPDERLKMEIEDPTIKDKSGRVLDVVAPIGKGQRCLIVAPPRVGKTIMMQNIARAISHNHPEVFLIVLLIDERPEEVTDMQRTVNGEVVSSTFDEPATRHVQVAEMVIEKAKRLVEHKKDVVILLDNITRLGRAYNTVVPSSGKVLTGGVDANALQRPKRFFGAARNIEEGGSLTIISTSLIDTGSRMDEVIFEEFKGTGNAEIVLDRKIADKRIFPAIDVGKSGTRKEELLVEKGTLSKMWVLRRILMQMGTVDAVEFLLGKMKDSKTNEDFFESMNQ*