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SCN18_31_3_15_R4_B_scaffold_2343_7

Organism: SCN18_31_3_15_R4_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_12

near complete RP 49 / 55 BSCG 51 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(5460..6008)

Top 3 Functional Annotations

Value Algorithm Source
RNA 2',3'-cyclic phosphodiesterase {ECO:0000256|HAMAP-Rule:MF_01940}; Short=RNA 2',3'-CPDase {ECO:0000256|HAMAP-Rule:MF_01940};; EC=3.1.4.- {ECO:0000256|HAMAP-Rule:MF_01940};; TaxID=69974 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium plurifarium.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.2
  • Coverage: 176.0
  • Bit_score: 193
  • Evalue 1.50e-46
2''-5'' RNA ligase n=1 Tax=Rhizobium sp. CF080 RepID=J2RU63_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 53.4
  • Coverage: 178.0
  • Bit_score: 191
  • Evalue 5.40e-46
2'-5' RNA ligase similarity KEGG
DB: KEGG
  • Identity: 53.4
  • Coverage: 178.0
  • Bit_score: 189
  • Evalue 5.80e-46

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 549
ATGATCCGTTTGTTCACCGCGCTTGAGCTTCCCGATTCCGTGGCACAAGGCCTTTCGCTGATTCAGGCCGGTGTTCCCGGCGCGCGCTGGCAATCGCGGGAGCAATTGCACCTGACCTTGCGCTTTATCGGTGAGGTGGATGGGCGCGATGCCAACGCGATTGACGATGCGCTGTCGGGAATCGATGCGCCCGGTTTTATGTTGACGCTCAAAGGTGTGGGCGAGTTCGGCGGGAAAAATCCTCGCGCCTTATGGGCGGGCGTGGAGCCTTCACCTGCGCTCACCCATCTGCAGCGCAAGATCGAAAGCGCTCTTCAACGCGCCGGCCTCCCGGCAGAGCCGCGGAAATACACCCCGCATGTCACACTGGCCCGTTTGCGCAACACGCCGCCGGGCGCGGTGATGGACTATCTGACCGATCATGGCCTTTATGCCAGCACGCCATTCGCGGTTGGAAGCTTCACGTTGTTTTCCAGCGTGCTGTCCCAGAACGGCAGCATCTACCGGCAGGAACAGGTCTACCCCTTGCGTGAGGACAATGGCGCCTAG
PROTEIN sequence
Length: 183
MIRLFTALELPDSVAQGLSLIQAGVPGARWQSREQLHLTLRFIGEVDGRDANAIDDALSGIDAPGFMLTLKGVGEFGGKNPRALWAGVEPSPALTHLQRKIESALQRAGLPAEPRKYTPHVTLARLRNTPPGAVMDYLTDHGLYASTPFAVGSFTLFSSVLSQNGSIYRQEQVYPLREDNGA*