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SCN18_31_3_15_R4_B_scaffold_8766_1

Organism: SCN18_31_3_15_R4_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_12

near complete RP 49 / 55 BSCG 51 / 51 MC: 2 ASCG 11 / 38 MC: 1
Location: comp(3..1448)

Top 3 Functional Annotations

Value Algorithm Source
Sigma-54 factor interaction domain-containing protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IX08_POLGS similarity UNIREF
DB: UNIREF100
  • Identity: 63.3
  • Coverage: 474.0
  • Bit_score: 576
  • Evalue 2.10e-161
Response regulatory protein {ECO:0000313|EMBL:CDO58957.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 65.4
  • Coverage: 488.0
  • Bit_score: 610
  • Evalue 1.10e-171
Sigma-54 factor interaction domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 63.3
  • Coverage: 474.0
  • Bit_score: 576
  • Evalue 5.90e-162

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1446
ATGCGCCACAACACAACAGAGGAAAAGATGGCGCAGACGATCCTCATCGTCGACGACGACCCGGTTCAACGCAGGCTTCTGGAAGCGGCAATCACCAAGGCCGGCATGGCGGCGGTGACCGCGCCGGGCGGCGGGCCTGCGCTCGACCTGCTGCGTGGGCCGCGGGGCGAGCAGATCGCGCTTGTCCTTTTGGATCTGGTGATGCCCGATGTCGACGGCATCACGGTACTGACGCGGTTGCGCGCGGCGCACAACGAATTGCCGGTGATCGTACTGACGGCCAAGGGCGGCATCGATTCCGCGGTGGAGGCGATGCGGGCCGGCGCCAACGATTTTCTGGTCAAACCGGCGAACCCGGAACGCATCACCGTTTCGATCCGCAACGCGCTCAAGATCGGCACCCTGTCAGGCGAAGTGACGCGGCTGAAGAAACGCAACGACAACCGGCTTCTGTTCGACGATCTGGTGGCACGCAGTTCCGAGATGCGCCAGGTGTTCCGGCTGGGCACGCGCGCGGCGCAATCGAACATCCCGATCCTGATCGAAGGCGAATCCGGCGTCGGCAAGGAATTGATCGCGCGCGCGATCCAGGGCGGATCGGAACGCGCCGGCAAGCCGTTCATCACCGTCAATTGCGGCGCAATACCGGAAAACCTGGTCGAATCCATTCTGTTCGGCCACGAGAAAGGCGCCTTCACCGGCGCCACGGAACGCCACTTCGGCAAGTTTCAGGAAGCCCATGGCGGCACACTGTTCCTGGATGAGATCGGGGAACTGCGCCTCGACATGCAGGTGAAACTGCTGCGCGCGCTGCAGGAAGGCGAGGTCGACCCGGTGGGTGCCAAGCGGCCGGTCAAGGTGGATGTGCGCATCATTTCCGCCACCAATCGCGATCTGGCCGAACTGACCCGCGAAGGCAGCTTCCGCGAGGATCTTTATTATCGGCTGAACGTGTTTCCGATCTTCGTACCGCCCTTGCGCCAGCGGCGTGAGGTCATTGCGGCCCTGACCCGCCACTTCATCGCCCGCTTCGCGGCGGAAGAGAACAAGCCGGTTTCAGGCCTGACGCCGGAAGCCGCAGAACTTCTGGAAAATTACGACTGGCCGGGCAATGTGCGCCAGCTTGAGAACACCGTGTTCCGGGCCGTGGTGCTGTGCGACGGCATGATGCTGGATGTGTGCGATTTTCCGCAGATCGCGGCGGCCATGGGCGTCAACCCGGCGCCGCGCCGGCAGATCATTGCACCGGCCAAGGCGAGCGAGGGGGGCTATGCGCCGCAAGCCTTCGGGCAGGCGGCGATGCCATCGCCCTATGCGCTGTCGGCGATCGACGCCGCGGGCCATATGCGCAAGCTGGAAGAAGTGGAATCGGAGATCATCCGTCTCGCGATTTCCCGCTATGACGGCCACATGTCGGAAGTGGCGCGCAGGCTGGGGATCGGGCGT
PROTEIN sequence
Length: 482
MRHNTTEEKMAQTILIVDDDPVQRRLLEAAITKAGMAAVTAPGGGPALDLLRGPRGEQIALVLLDLVMPDVDGITVLTRLRAAHNELPVIVLTAKGGIDSAVEAMRAGANDFLVKPANPERITVSIRNALKIGTLSGEVTRLKKRNDNRLLFDDLVARSSEMRQVFRLGTRAAQSNIPILIEGESGVGKELIARAIQGGSERAGKPFITVNCGAIPENLVESILFGHEKGAFTGATERHFGKFQEAHGGTLFLDEIGELRLDMQVKLLRALQEGEVDPVGAKRPVKVDVRIISATNRDLAELTREGSFREDLYYRLNVFPIFVPPLRQRREVIAALTRHFIARFAAEENKPVSGLTPEAAELLENYDWPGNVRQLENTVFRAVVLCDGMMLDVCDFPQIAAAMGVNPAPRRQIIAPAKASEGGYAPQAFGQAAMPSPYALSAIDAAGHMRKLEEVESEIIRLAISRYDGHMSEVARRLGIGR