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SCN18_14_9_16_R3_B_scaffold_5_63

Organism: SCN18_14_9_16_R3_B_SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10_37_82

near complete RP 49 / 55 MC: 1 BSCG 51 / 51 ASCG 13 / 38
Location: comp(68447..68992)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Niastella koreensis (strain DSM 17620 / KACC 11465 / GR20-10) RepID=G8TMJ0_NIAKG similarity UNIREF
DB: UNIREF100
  • Identity: 51.7
  • Coverage: 174.0
  • Bit_score: 186
  • Evalue 1.30e-44
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 51.7
  • Coverage: 174.0
  • Bit_score: 186
  • Evalue 3.70e-45
Tax=RIFCSPLOWO2_12_FULL_Bacteroidetes_31_6_curated similarity UNIPROT
DB: UniProtKB
  • Identity: 54.2
  • Coverage: 179.0
  • Bit_score: 196
  • Evalue 1.80e-47

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Taxonomy

SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → SCNPILOT_EXPT_1000_BF_Sphingobacteriia_40_10 → Sphingobacteriales → Sphingobacteriia → Bacteroidetes → Bacteria

Sequences

DNA sequence
Length: 546
TTGTTATCCGAAAAAAAATATACAGAAGAAGAATTGGTGATACTCTTGCAGCGGCAAAACAAAACTGCATTTTCTTATTTATATGAGAATTATGCAGCTGCATTGAATGGAGTTGTTTTTAAAATGGTGGAAGATGAGGCCCTTGCAGAAGATATTTTGCAGGAAGTATTTATTAAGATATGGAATAACATCGGTTCTTACGATAAATCAAAGGGAAGATTGTTTACCTGGATGCTACAAATAGCCCGAAATCTTACTATAGACATTATGCGCAGCAAAGGCTATAAAAAACAATCTCAAATCTCAGGCGATGAAAATTCCGTAACTAATATATCGGGCAGGGATTCGGGGATTGAAAAATTAGATGCAATAGGTATAGATAAACAGATCATGAACTTAAAACCCGAGTATCGTATTTTAATTGATATGGCTTATTTTAAAGGCTATACGCAAGATGAAATTGCCAAGTTATTAAACATACCTTTAGGAACTGTAAAAACAAGAATTAGAAATGCCATTCTTGAACTTAAAAAAATGATGACTTAA
PROTEIN sequence
Length: 182
LLSEKKYTEEELVILLQRQNKTAFSYLYENYAAALNGVVFKMVEDEALAEDILQEVFIKIWNNIGSYDKSKGRLFTWMLQIARNLTIDIMRSKGYKKQSQISGDENSVTNISGRDSGIEKLDAIGIDKQIMNLKPEYRILIDMAYFKGYTQDEIAKLLNIPLGTVKTRIRNAILELKKMMT*