ggKbase home page

SCN18_25_8_15_R4_B_scaffold_2258_1

Organism: SCN18_25_8_15_R4_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_10

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: 3..290

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease VapC {ECO:0000256|HAMAP-Rule:MF_00265}; Short=RNase VapC {ECO:0000256|HAMAP-Rule:MF_00265};; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00265};; Toxin VapC {ECO:0000256|HAMAP-Rule:MF_00265}; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.9
  • Coverage: 95.0
  • Bit_score: 119
  • Evalue 2.50e-24
Ribonuclease VapC n=1 Tax=Rhodovulum sp. PH10 RepID=J6JAR8_9RHOB similarity UNIREF
DB: UNIREF100
  • Identity: 58.9
  • Coverage: 95.0
  • Bit_score: 119
  • Evalue 1.80e-24
putative pilT protein, N-terminal, putative toxin of TAS system similarity KEGG
DB: KEGG
  • Identity: 57.9
  • Coverage: 95.0
  • Bit_score: 114
  • Evalue 9.50e-24

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 288
GCCACATGGTTTGAAGCTGCAATCGTTGCAGACCGCTTCCGCGCCCCGTCGGTGGGCCGCCGCTTCGATGACATCTGCCGTGAACTGAGCCTTGCCGTTGTGCCGCTGGACGAAGCGCAGGCACGGATCGCGCGCGAGGCCTATCGCGATTTCGGCAAGGGCAGCGGCCACAAGGCGCAGCTCAATTTCGGGGATTGCTTTGCCTATGCGCTGGCCAAGACGATGAACGAGCCCCTGCTCTACAAAGGTACCGATTTCAGCCAGACCGACGTCAGAACGGCGGTTTAG
PROTEIN sequence
Length: 96
ATWFEAAIVADRFRAPSVGRRFDDICRELSLAVVPLDEAQARIAREAYRDFGKGSGHKAQLNFGDCFAYALAKTMNEPLLYKGTDFSQTDVRTAV*