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SCN18_25_8_15_R4_B_scaffold_7415_1

Organism: SCN18_25_8_15_R4_B_SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41_62_10

near complete RP 46 / 55 MC: 2 BSCG 47 / 51 MC: 7 ASCG 11 / 38 MC: 2
Location: 1..2694

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Short=RNAP subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322};; EC=2.7.7.6 {ECO:0000255|HAMAP-Rule:MF_01322};; RNA polymerase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; Transcriptase subunit beta' {ECO:0000255|HAMAP-Rule:MF_01322}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.6
  • Coverage: 898.0
  • Bit_score: 1203
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=RPOC_PARL1 similarity UNIREF
DB: UNIREF100
  • Identity: 66.6
  • Coverage: 898.0
  • Bit_score: 1203
  • Evalue 0.0
DNA-directed RNA polymerase subunit beta' similarity KEGG
DB: KEGG
  • Identity: 66.6
  • Coverage: 898.0
  • Bit_score: 1203
  • Evalue 0.0

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Taxonomy

SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → SCNPILOT_SOLID2_TRIM150_Alphaproteobacteria_62_41 → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2694
ATCATCGTGCCGACGCAGGATATCGTGCTCGGCCTCTATTACCTCAGTCAGGAACGTGAAAAGGAACCGGGCGAGGGCATGGTGTTCAACGACATCGGCGAGATTGAGCACGCGCTCTTCTCCGGTGCCGTGACCCTGCACGCGAAGATCGAGGCCCGCTACAAAACCGTGGATGCGGATGGCAATCCGATCACCCGCCGGGTGAAGTCTACGCCGGGCCGCATGATGATCGCGGAAATCCTGCCGCGGCACCCGAAGATCCCGTTCGAGCTGGTGAACCGCCTGCTGCGCAAGCAGGAGGTCAGCAACATCATCGACGAAGTCTACCGCCATTGCGGTCAGAAGGAGACGGTGCTGTTCGCCGATGCGGTGATGGGCCTGGGTTTCAAGGAAGCCTGCAAGGCCGGCATCTCGTTCGGCAAGGACGATATGGTGGTGCCTGCCACCAAGGAAAAGCTGATCGACGAAACGCGCCATCGCGTGCGTGAGTACGAACAGCAATATCTGGACGGTCTGACCACCGACAAGGAGAAGTACAACCTCGTCGTCGATACCTGGTCGAAATGTACCGATCAGGTGGCCGCCGAAATGATGAAGGAGATTTCCGAACCGAAGATCGATCCGGAGACGGGCCGCATCCAGGAAATGAACTCCATCTATATGATGAGCCATTCCGGCGCCCGTGGGTCGCCCCAGCAGATGAAACAGCTTGCCGGTATGCGCGGGCTGATGGCGCGGCCTGACGGTTCCATCATCGAAACCCCGATCCTTTCCAACTTCAAGGAAGGGTTGACGGTGCTGGAATACTTCAACTCCACCCACGGCGCGCGCAAGGGCCTGGCCGATACCGCGCTCAAGACGGCGAACTCGGGTTACCTGACCCGCCGCCTGGTGGACGTGGCGAACGACTGCATCATCACCGCGGAAGATTGCGGCACCAAGAACGGCGTCACCGTTCAGGCCGAAATCGACGGCGGTCAGGTGGTGGCATCGCTGGCCGAACGCATTCTGGGCCGCACGGTGGCGGAGGATGTGAAGCACCCCGACACCGGCGACATCATCCTGAAGCGCGGCCGTGAGGTGACGGAAGACATCGCGGACAAGATCGAAAACGCCCATATCCAGAAGGTGCGGGTGCGTTCGGTGCTGTCCTGCGAATTGTCCGATGGCGTTTGCGGCAAGTGCTATGGGCGCGATCTGGCCCGCGGCACCGCGGTCAATATCGGTGAGGCGGTCGGCGTCATCGCGGCGCAGTCGATCGGTGAACCGGGTACGCAGCTTACCATGCGGACCTTCCACATCGGCGGCGCGGCACAGTTCGCCGGGCAGTCGAAGATCGAGGCCAGCTATGACGGCAAGGTGAAAATCGTCAATCGCAACGTCGTGAAGAATTCCGACGGCGAAGTGGTGGCGATGGGCCGCAACATGCAGATCGCCATTCTGGACCCGAAGGGCGCGGAACGCGCCAGCTATCGCATCACCTATGGCGCACGCCTGAAGGTGGACGATGGCGCGATGGTGAAGCGCGGCGACCGTCTGGCGGAATGGAACCCCAACGCCATCCCCGTGCTGACCGAGGTCGAAGGCATCGTGAAGTACGAGGAGCTGGTCTCCGGCATTTCGCTGAAGGAAGTGGCGGACGAAAAGACCGGCGTGTCGAACAAGGTGGTGATGGACAGCCGTGGCGCCGGTTCGCGCGGCAGCGAGCTTCGTCCCTCCATCGTGATCGTCGACAAGAGCGGTTCGGTGATCAAGCTGCCCGCGGGCGGCGAGGCGCGTTATGGTCTTTCCGTCGATGCCATTCTGTCGGTGGAAGACGGGGCGCAGGTTCGCGCGGGCGACGTAGTTGCCCGTCTGCCGACCGAAGGCGCCAAGACGCGTGACATCACCGGTGGTCTGCCGCGCGTGGCGGAATTGTTCGAAGCCCGCAAGCCGAAGGAAGCTGCCGTGCTGGCAGAGGTCGACGGCTTTGTCGAATTCGGCAAGGACTACAAGAACAAGCGCCGCGTCATCGTCAACCCGAAGAACGAGAAGCTGGAGCCCGTCGAATATCTGATCCCGAAGGGCAAGCACATCTCGGTGCGCGAGGGCGATTTCGTCGAAAAGGGCGACTACATCGTCGAAGGCAATCCTTCGCCGCACGACATTCTGCGCATCAAGGGCGTGGAAGAGCTTGCGATCTATCTGGTGAAGGAAATCCAGGACGTCTATCGCCTGCAAGGTGTGAAGATTAACGACAAGCACATTGAAGTGATCGTCCGCCAGATGATGCAGAAGATGGAAATCCTGGACGGTGGCGATACCACGCTGCTGGCTGGCGAGCAGGTCGATCTTCTGGAGATGAAGGAAGCGAACGCCAAGGCTGCGGAGCAAGGCCAGAAACTTGCCGAAGGCCGCCCGGTTCTGCTTGGCATCACCAAGGCAAGCCTGCAGACGCGGTCCGTCTTCTCGGCGGCGTCGTTCCAGGAAACCACCCGCGTGCTGACCGATGCCGCCGTCAACGGCAAGGTCGATACGCTGGAAGGGTTGAAGGAAAACGTCATCGTCGGCCGTCTGATCCCCGCCGGTACCGGCGGCGCCATCGCGCGCCTGCGTCAGGTGGCGATGGAACGCGACAAGGCGGTTCAGGAAGAACTGGCCAAGGGCGAGGTGCCGCAGTTGGAAGGCCCGCAGCCGCAGGAAGCTGCCGAATAA
PROTEIN sequence
Length: 898
IIVPTQDIVLGLYYLSQEREKEPGEGMVFNDIGEIEHALFSGAVTLHAKIEARYKTVDADGNPITRRVKSTPGRMMIAEILPRHPKIPFELVNRLLRKQEVSNIIDEVYRHCGQKETVLFADAVMGLGFKEACKAGISFGKDDMVVPATKEKLIDETRHRVREYEQQYLDGLTTDKEKYNLVVDTWSKCTDQVAAEMMKEISEPKIDPETGRIQEMNSIYMMSHSGARGSPQQMKQLAGMRGLMARPDGSIIETPILSNFKEGLTVLEYFNSTHGARKGLADTALKTANSGYLTRRLVDVANDCIITAEDCGTKNGVTVQAEIDGGQVVASLAERILGRTVAEDVKHPDTGDIILKRGREVTEDIADKIENAHIQKVRVRSVLSCELSDGVCGKCYGRDLARGTAVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQFAGQSKIEASYDGKVKIVNRNVVKNSDGEVVAMGRNMQIAILDPKGAERASYRITYGARLKVDDGAMVKRGDRLAEWNPNAIPVLTEVEGIVKYEELVSGISLKEVADEKTGVSNKVVMDSRGAGSRGSELRPSIVIVDKSGSVIKLPAGGEARYGLSVDAILSVEDGAQVRAGDVVARLPTEGAKTRDITGGLPRVAELFEARKPKEAAVLAEVDGFVEFGKDYKNKRRVIVNPKNEKLEPVEYLIPKGKHISVREGDFVEKGDYIVEGNPSPHDILRIKGVEELAIYLVKEIQDVYRLQGVKINDKHIEVIVRQMMQKMEILDGGDTTLLAGEQVDLLEMKEANAKAAEQGQKLAEGRPVLLGITKASLQTRSVFSAASFQETTRVLTDAAVNGKVDTLEGLKENVIVGRLIPAGTGGAIARLRQVAMERDKAVQEELAKGEVPQLEGPQPQEAAE*