ggKbase home page

SCN18_31_3_15_R3_B_scaffold_129_20

Organism: SCN18_31_3_15_R3_B_SCNPILOT_EXPT_300_BF_Sphingomonas_67_13_68_146

near complete RP 51 / 55 BSCG 51 / 51 ASCG 11 / 38 MC: 1
Location: comp(33422..33973)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Sphingomonas sp. PAMC 26617 RepID=UPI000287FEDD similarity UNIREF
DB: UNIREF100
  • Identity: 53.7
  • Coverage: 175.0
  • Bit_score: 191
  • Evalue 4.20e-46
ECF subfamily RNA polymerase sigma-24 factor similarity KEGG
DB: KEGG
  • Identity: 57.9
  • Coverage: 159.0
  • Bit_score: 188
  • Evalue 1.70e-45
RNA polymerase, sigma-24 subunit, ECF subfamily {ECO:0000313|EMBL:ABQ67290.1}; TaxID=392499 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 57.9
  • Coverage: 159.0
  • Bit_score: 188
  • Evalue 8.40e-45

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

SCNPILOT_EXPT_300_BF_Sphingomonas_67_13 → Sphingomonas → Sphingomonadales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 552
GTGGCGGAAACGGTGATCCCGTACGAGAGCACGGTACGGGCATGGCTGGTGCGCGCGCGCGTTTCGGAGGAGGATATCGATGACATCGTTCAGGAAGCCTATTGCCGCCTCGCCGCGCTCGACACGGTCGACCATATCACGCGTCCGGGCGCCTATTTCTTCTCGATCGTACGCAACCTGCTGCTGCAGCGCCTCAAGCGCGGCCGGATCGTATCGATCGACATGATCGCCGAGATCGAAACCTATGCGATCGACGACAGCCCCTCGCCCGAACGCGAAGCCGCGGGCCGGCTCGACTATGCGCGATTGCGCGCGATCATGGCCGGCCTGCCCGAACGCTGCCGGCGCATCGTCGAGATGCGCAAGATCGAGGGCATCTCCCAGAAGGAGATCGCGCGCCGCGTGGGCGTCAGCGAGAGCGTGGTCGAGAACGACGTCCATCAGGGCGTCCAGACGATCCTGCGCGTCTGGCGCGACGAGGACCGCCGGGTGATGGCGTGGCTGAACGGCTTCGAAGCCGGCACGCCGCGCGCGGACGGGGGGCGCCGGTAA
PROTEIN sequence
Length: 184
VAETVIPYESTVRAWLVRARVSEEDIDDIVQEAYCRLAALDTVDHITRPGAYFFSIVRNLLLQRLKRGRIVSIDMIAEIETYAIDDSPSPEREAAGRLDYARLRAIMAGLPERCRRIVEMRKIEGISQKEIARRVGVSESVVENDVHQGVQTILRVWRDEDRRVMAWLNGFEAGTPRADGGRR*