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SCN18_31_3_15_R1_B_scaffold_392_18

Organism: SCN18_31_3_15_R1_B_SCNPILOT_CONT_1000_BF_Rhizobiales_65_79_68_31

near complete RP 50 / 55 BSCG 51 / 51 MC: 1 ASCG 12 / 38 MC: 1
Location: comp(16716..17732)

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=744980 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseibium.;" source="Roseibium sp. TrichSKD4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 89.3
  • Coverage: 336.0
  • Bit_score: 599
  • Evalue 2.20e-168
DNA-directed RNA polymerase subunit alpha n=1 Tax=Kaistia granuli RepID=UPI00037DADD5 similarity UNIREF
DB: UNIREF100
  • Identity: 89.9
  • Coverage: 338.0
  • Bit_score: 607
  • Evalue 4.50e-171
rpoA; DNA-directed RNA polymerase subunit alpha similarity KEGG
DB: KEGG
  • Identity: 88.7
  • Coverage: 336.0
  • Bit_score: 595
  • Evalue 6.50e-168

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Taxonomy

SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial → SCNPILOT_CONT_300_BF_Rhizobiales_67_6_partial → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1017
ATGATCCAAAAAAACTGGCAAGAGCTGATCAAGCCGAACAAGCTCGAAATCTCTCAAGGGTCCGATGCCCGCCGCGTCGCCACCGTCGTCGCCGAGCCGCTCGAGCGCGGCTTCGGCCTGACGCTCGGCAATGCGCTTCGCCGCGTGCTCCTCTCCTCGCTCCAGGGCGCCGCCGTCAAGGCCGTCCAGATCGATGGCGTGCTGCATGAATTCTCCTCGATCGCGGGCGTGCGCGAGGACGTCACCGACATCGTCCTCAACATCAAGGAAATCGCCATCAGGATGCATGGCGACGGCCCGAAGCGGATGGTGCTGCGCAAGCAGGGCCCTGGCACGGTCACCGCCGGCGACATCCAGACCGTCTCGGACATCGAGGTGCTCAACCCCGACCTCGTGCTCTGCACGCTGGACGAGGGCGCCGAGATCCGCATGGAATTCACCGTCGACACCGGCAAGGGCTACGTCCCGGCCGACCGCAACCGGCCCGAGGACGCGCCGATCGGGCTGATCCCAGTCGACAGTCTCTATTCGCCGGTGAAGAAGGTTTCCTACCGCGTCGAGAACACCCGCGAGGGCCAGGTCCTCGACTATGACAAGCTGACGCTCACGGTCGAGACCGACGGCTCGATCCGGGCCGAGGACGCGGTCGCCTATGCCGCCCGCATCCTGCAGGACCAGCTCTCGATCTTCGTCAATTTCGAGGAGCCGCAGAAGGAGCAGAAGGAGGTCTCGATCCCCGAGCTCGCCTTCAACCCGGCGCTGCTCAAGAAGGTGGACGAGCTCGAGCTCTCCGTGCGCTCGGCCAACTGCCTGAAGAACGACAACATCGTCTATATCGGCGACCTCATCCAGAAGACCGAGGCGGAGATGCTCCGCACCCCGAACTTCGGCCGCAAGTCGCTGAACGAGATCAAGGAAGTGCTCGCCCAGATGGGCCTGCACCTCGGCATGGAAGTGCCGAACTGGCCGCCGGAGAACATCGACGAGCTGGCCAAGCGTTACGAAGACCATTATTGA
PROTEIN sequence
Length: 339
MIQKNWQELIKPNKLEISQGSDARRVATVVAEPLERGFGLTLGNALRRVLLSSLQGAAVKAVQIDGVLHEFSSIAGVREDVTDIVLNIKEIAIRMHGDGPKRMVLRKQGPGTVTAGDIQTVSDIEVLNPDLVLCTLDEGAEIRMEFTVDTGKGYVPADRNRPEDAPIGLIPVDSLYSPVKKVSYRVENTREGQVLDYDKLTLTVETDGSIRAEDAVAYAARILQDQLSIFVNFEEPQKEQKEVSIPELAFNPALLKKVDELELSVRSANCLKNDNIVYIGDLIQKTEAEMLRTPNFGRKSLNEIKEVLAQMGLHLGMEVPNWPPENIDELAKRYEDHY*