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SCN18_25_1_16_R2_B_scaffold_3145_9

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_500_BF_Actinomycetales_73_43_73_7

partial RP 27 / 55 BSCG 31 / 51 MC: 2 ASCG 8 / 38 MC: 1
Location: comp(5521..5859)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4GYT4_CELFA similarity UNIREF
DB: UNIREF100
  • Identity: 70.1
  • Coverage: 107.0
  • Bit_score: 140
  • Evalue 6.70e-31
FliA/WhiG subfamily RNA polymerase sigma-28 subunit similarity KEGG
DB: KEGG
  • Identity: 70.1
  • Coverage: 107.0
  • Bit_score: 140
  • Evalue 1.90e-31
RNA polymerase, sigma 28 subunit, FliA/WhiG subfamily {ECO:0000313|EMBL:AEE44803.1}; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 70.1
  • Coverage: 107.0
  • Bit_score: 140
  • Evalue 9.50e-31

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Taxonomy

SCNPILOT_CONT_500_BF_Actinomycetales_73_43 → Cellulomonas → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 339
CGGCTGCGCGTCGTGGTCGTCGGGCTGTACCTGCAGGACCGCACGATCGCGGACCTGGCGGCCGAGCTCGGGGTGACGGAGTCCCGGATCAGCCAGCTGCGCACCGAGGCGCTCGGGCTGCTGCGGGACGGCATGAACGCCTCGCTCGACCCCGACCTGGTGCCCGCGGCGCAGCGTCCCCAGGGCGTGGCCGAGCGGCGGCGCCGGGCGTACTTCGCGGCCGTGGCGGCCCGTGCGGCCATGCCGGCGGCGAGCACCGCGCCGGTGGTCGACGTTCCGCAGCAGCGTGGGCGCGAGGCGGCGGCGGACCAGCTGCGCCGCCCCCGAGCCACCGCCTGA
PROTEIN sequence
Length: 113
RLRVVVVGLYLQDRTIADLAAELGVTESRISQLRTEALGLLRDGMNASLDPDLVPAAQRPQGVAERRRRAYFAAVAARAAMPAASTAPVVDVPQQRGREAAADQLRRPRATA*