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SCN18_25_1_16_R2_B_scaffold_12625_2

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_500_BF_Actinomycetales_73_43_73_7

partial RP 27 / 55 BSCG 31 / 51 MC: 2 ASCG 8 / 38 MC: 1
Location: 311..856

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase, sigma-24 subunit, ECF subfamily n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4H0L7_CELFA similarity UNIREF
DB: UNIREF100
  • Identity: 55.9
  • Coverage: 161.0
  • Bit_score: 165
  • Evalue 4.10e-38
Uncharacterized protein {ECO:0000313|EMBL:KGM14664.1}; TaxID=862422 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Actinotalea.;" source="Actinotalea fermentans ATCC 43279 = JCM 9966 = DSM 3133.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 66.5
  • Coverage: 182.0
  • Bit_score: 231
  • Evalue 6.60e-58
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 55.9
  • Coverage: 161.0
  • Bit_score: 165
  • Evalue 1.20e-38

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Taxonomy

SCNPILOT_CONT_500_BF_Actinomycetales_73_43 → Cellulomonas → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 546
ATGGCCGCGTGGCAAGGACTCCTGGAGGAGCTGCTGCGGGAACGCCGACCGGCGCTGGTCGCCTACGCGTCACTGCTGACGGGCGACCGCTGCGCGGCGGAGGACCTGGTGCACGACGCGCTCGTCCGCACGTTCGGCCGCCCGCGTGCCCTGCCGAACGTGAACGCCGCCGACGCGTACGTGCGCCGTGCGATCGCGAGCATCTTCATCGACCGTGCCCGCTCGCGGCGGCGTTGGCTGACGGCGCTGCCGCGCATGGCTGGGGGCACGGACTCCGACCAGGGGCCCGACGAGGTCGCCGCGCGGCTGGACGCGCGTGCCGCCCTGGTCACGCTGCCGCGGAGGCAACGGACGTGCGTCGTGCTGCGGTTCTACGACGACCTGACGGTGCCGGAGATCGCCCACCAGCTGGGACTCAGCGACGGCGCCGTGAAGCGATACCTGAGTGACGGCATCCACCACCTCAATGCCCTGCTCGGCACCACCGCCGAGGTGGGTGACGCGACGAGCGTCCCCGTGTACACGAGCGGAAGGAGACCGCGATGA
PROTEIN sequence
Length: 182
MAAWQGLLEELLRERRPALVAYASLLTGDRCAAEDLVHDALVRTFGRPRALPNVNAADAYVRRAIASIFIDRARSRRRWLTALPRMAGGTDSDQGPDEVAARLDARAALVTLPRRQRTCVVLRFYDDLTVPEIAHQLGLSDGAVKRYLSDGIHHLNALLGTTAEVGDATSVPVYTSGRRPR*