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SCN18_25_1_16_R2_B_scaffold_5265_6

Organism: SCN18_25_1_16_R2_B_Microbacterium_71_11

near complete RP 51 / 55 MC: 1 BSCG 51 / 51 MC: 3 ASCG 13 / 38 MC: 1
Location: 2093..3082

Top 3 Functional Annotations

Value Algorithm Source
DNA-directed RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Short=RNAP subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059};; EC=2.7.7.6 {ECO:0000256|HAMAP-Rule:MF_00059};; RNA polymerase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; Transcriptase subunit alpha {ECO:0000256|HAMAP-Rule:MF_00059}; TaxID=1177594 species="Bacteria; Actinobacteria; Micrococcales; Microbacteriaceae; Microbacterium.;" source="Microbacterium sp. C448.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.0
  • Coverage: 329.0
  • Bit_score: 621
  • Evalue 4.10e-175
DNA-directed RNA polymerase subunit alpha n=1 Tax=Microbacterium sp. B19 RepID=UPI000345F016 similarity UNIREF
DB: UNIREF100
  • Identity: 97.9
  • Coverage: 329.0
  • Bit_score: 623
  • Evalue 1.00e-175
rpoA; DNA-directed RNA polymerase, alpha subunit/40 kD subunit similarity KEGG
DB: KEGG
  • Identity: 96.0
  • Coverage: 329.0
  • Bit_score: 615
  • Evalue 5.90e-174

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Taxonomy

CN-SCN_Microbacterium_18x → Microbacterium → Actinomycetales → Actinobacteridae → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 990
GTGCTCATCGCACAGCGTCCCACCCTGACCGAGGAGAAGATCGGGGAGTTCCGCAGCCGCTTCATCATCGAGCCCCTGGAGCCCGGCTTCGGCTACACCATCGGCAATGCGCTGCGTCGCAGCCTTCTGTCCTCGATCCCGGGGGCGGCGGTCACCAGCATCCGCATCGACGGCGTCCTCCACGAGTTCAGCACCATTCCGGGTGTCAAGGAGGATGTCACCGAGATCATCCTCAACATCAAGCAGCTGGTCGTCTCCAGCGAGCGCGACGAGCCGATCACGGCGTACCTGCGCAAGACCGGCGCCGGTGAGGTCACCGCCGCCGACATCTCCGCTCCGGCCGGCGTCGAGGTGCACAACCCCGAACTGGTCATCGCGACCCTGAACGACACCGCGCGCTTCGAGCTCGAGCTCACGATCGAGCGCGGCCGCGGCTACGTGTCGGCCACGCAGAACCGCAACGAGTACGCCGAGGCGGGGCAGATCCCGATCGACTCGATCTACTCGCCGGTGCTCAAGGTCAGCTACCGCGTCGACGCGACGCGTGCGGGCGAGCGCACCGACTTCGACAAGCTCGTGCTCGACGTGGAGTCGAAGTCCTCCATCGCCCCGCGCGACGCCGTGGCGTCCGCCGGTCGCACGCTGACCGAGCTGTTCGGCCTCGCCCGCGAGCTGAACGTCGACGCCGAGGGCATCGAGATCGGCCCCGCGCCGGTCGAGACGGTCCTGTCGAACGAGCTGTCGATGCCCATCGAGGACCTCGACCTGTCGGTGCGGTCGTACAACTGCCTGAAGCGTGAGGGCATCAACACGGTCTCCGAGCTCGTCGCTCTGTCCGAGACCCAGCTGATGAACATCCGCAACTTCGGCCAGAAGTCGGTCGACGAGGTGCGCGACAAGCTGACGTCGCTCGGCCTGTCGCTGAAGGACTCGGTCCCCGGGTTCGACGGCGCGCACTTCTACGGCGGCTACGACGACGAGACCGCCTGA
PROTEIN sequence
Length: 330
VLIAQRPTLTEEKIGEFRSRFIIEPLEPGFGYTIGNALRRSLLSSIPGAAVTSIRIDGVLHEFSTIPGVKEDVTEIILNIKQLVVSSERDEPITAYLRKTGAGEVTAADISAPAGVEVHNPELVIATLNDTARFELELTIERGRGYVSATQNRNEYAEAGQIPIDSIYSPVLKVSYRVDATRAGERTDFDKLVLDVESKSSIAPRDAVASAGRTLTELFGLARELNVDAEGIEIGPAPVETVLSNELSMPIEDLDLSVRSYNCLKREGINTVSELVALSETQLMNIRNFGQKSVDEVRDKLTSLGLSLKDSVPGFDGAHFYGGYDDETA*