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SCN18_25_1_16_R2_B_scaffold_2187_3

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial_73_8

near complete RP 46 / 55 MC: 3 BSCG 47 / 51 MC: 4 ASCG 14 / 38 MC: 1
Location: comp(942..4595)

Top 3 Functional Annotations

Value Algorithm Source
Transcription-repair-coupling factor {ECO:0000256|HAMAP-Rule:MF_00969}; Short=TRCF {ECO:0000256|HAMAP-Rule:MF_00969};; EC=3.6.4.- {ECO:0000256|HAMAP-Rule:MF_00969};; TaxID=590998 species="Bacteria; Actinobacteria; Micrococcales; Cellulomonadaceae; Cellulomonas.;" source="Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513; / NCIMB 8980 / NCTC 7547).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 83.9
  • Coverage: 1226.0
  • Bit_score: 2036
  • Evalue 0.0
Transcription-repair-coupling factor n=1 Tax=Cellulomonas fimi (strain ATCC 484 / DSM 20113 / JCM 1341 / NBRC 15513 / NCIMB 8980 / NCTC 7547) RepID=F4GYN0_CELFA similarity UNIREF
DB: UNIREF100
  • Identity: 83.9
  • Coverage: 1226.0
  • Bit_score: 2036
  • Evalue 0.0
transcription-repair coupling factor similarity KEGG
DB: KEGG
  • Identity: 83.9
  • Coverage: 1226.0
  • Bit_score: 2036
  • Evalue 0.0

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Taxonomy

SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial → Cellulomonas → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 3654
ATGGACCTGACCGGACTGCTGCCTGCGCTGCTCGCCGACCCGGCGGCCGCCGAGGCCGTGCAGCAGGTGCGTGCCCGCGGCGAGCTGGACGTGGTGAGCCCGGCCGGCGTGCGGCCGCCCCTTCTCGCGGCGATGGCCGGGGCACGTCCGGCGGGCTCGCCGGCGGTGGCGGCCGGCCGGCCCCTCGTCGTCGTCACCGCCACCGGCCGCGACGCGGACGAGCTGGCCGGCGCGCTGCGCTGCTACCTGCCGGACGACGACGTGGCGGTGCTGCCGGCCTGGGAGACGCTGCCGCACGAGCGGCTGTCGCCCCGCAGCGACACGGTGGCCCGCCGCCTGGCGGTGTTCCGGCGGCTGGCGCACCCCAGCGAGCCGGGGCCGGCCGGACCGGTGCGGGTGCTGGTGGTGCCGGTGCGGGCGCTGCTGCAACCGGTGGTGGACGGGCTCGGCGAGCTGGTCCCCGTGCAGCTCGCCGTGGGGGACCGGGTGGACCTCGACCAGCTGGCGCAGGGGCTGGTGGACGCCGCGTACACCCGGGTGGACATGGTGGAGCGCCGCGGCGAGTTCGCCGTGCGCGGCGGCATCGTGGACGTGTTCCCGCCCACCGAGGACCACCCGCTGCGCATCGAGCTGTGGGGCGACCAGGTCGAGGAGATCCGCTGGTTCTCCGTCGCCGACCAGCGCAGCCTCGAGGTGCCGGACCGTGGCCTGTGGGCGCCGCCGTGCCGGGAGATCCTGCTGACCGACGCGGTGCGCGAGCGGGCCGCCGCGCTGGTCGAGCAGCTGCCGGGCGCGGTCGACATGCTCGACCGCCTGGCACAGGGCATCGCCGTGGAGGGCATGGAGTCGCTCGCGCCCGTGCTGGTCGACCGCATGGTGCCGGTGCTGGACCTGGTGCCCGACGACGCCCTGCTGGTGATCGCCGACCCCGAGCGGGTGCGGCGCCGGGCACACGACCTGGTGGCGACCACCCAGGAGTTCCTCGCGGCGGCCTGGACCGGCGCCGCAGCCGGTGGCGCGACCCCGCTGGACCTCTCGGCGGCGTCCTTCCACTCGTTCGCCGAGGTGCGCGGGCTCTCGGCGGTGCGCGGGCTGGGCTGGTGGACCCTGTCGTCGTTCTCGCTCGAGGTGGCGGCCGCTCCGGCGGGTGCGGACGGCGAGCACGACGACGCGGCGGACGACGGCCCGGCGGTCTCGTCGGACGCGACCACCCTGCTCGTTGCAGCCCGGGACGTGGAGCACTACCGCGGGGACGTCGCCCGCGCGATCACCGACCTGCACGCTCACCAGCAGGACGGCTGGCGGATGGTGCTGACCACCGAGGGGCACGGTTCGGCCCAGCGGATGGTGGAGCAGCTGCGCTCGGCGGACGTCCCGGCACGGCTGGTGTCCGGCGTGCCCGACGAGCTGGACCCCGGCGTGGTGCTCGTCGTGCCCGCACCGGCAGGCCCCGGGTTCGCGTCCGAGCAGCTGCGCCTGGCGCTGTTCAGCGAGTCCGACCTCACCGGCCGCGCCGGCACGTCGACCCGCGACATGCGCCGCATGCCGAGCCGCCGCCGCAACGTCGTGGACCCGCTGCAGCTGCGCCCGGGCGACTTCGTGGTGCACGAGCAGCACGGTGTGGGCCGGTTCGTCGAGCTGGTGCAGCGGACCATCGGCACGGGTCCGACGGCCGCGACCCGCGAGTACCTGGTCATCGAGTACGCGTCCGCCAAGCGCGGGCAGCCGGGCGACCGGCTCTACGTGCCGACCGACCAGCTCGACCAGGTGACCCGGTACGTCGGTGGCGAGTCGCCGACCCTCAACCGGATGGGCGGCGCCGACTGGGCCAAGACCAAGGGCCGGGCCAAGAAGGCGATCAAGGAGATCGCCGCCGAGCTCATCCGGCTGTACTCGGCCCGCATGGCGACGCCCGGCTACGCCTTCGGGCCGGACACCCCGTGGCAGCGCGAGCTGGAGGACGCGTTCGCCTACGTCGAGACCCCGGACCAGCTCGCCACGATCGACGAGGTCAAGGCGGACATGGAGAAGTCCGTCCCGATGGACCGGCTGATCTGCGGCGACGTCGGCTACGGCAAGACGGAGATCGCCATCCGCGCGGCCTTCAAGGCCGTGCAGGACGGCAAGCAGGTCGCGGTGCTGGTGCCGACCACGCTGCTGGTCTCCCAGCACCTGGAGACGTTCTCCGAGCGGTACGCGCCGTTCCCGGTGACGGTGAAGGCCCTCTCTCGGTTCGAGACGGCATCGGAGTCGAAGGAGGTGCTCGACGGGCTGGCCGACGGCAGCGTCGACGTGGTGATCGGCACGCACCGGCTGCTGGCCGGCGGGGTGCGGTTCAAGGACCTCGGGCTCGTGATCGTCGACGAGGAGCAGCGGTTCGGCGTCGAGCACAAGGAGACGCTGAAGGCGCTCCGCACCGACGTGGACGTGCTGTCGATGAGCGCCACGCCCATCCCGCGCACGCTCGAGATGGCTGTCACCGGCATCCGCGAGATGTCGACGTTGGCCACCCCACCGGAGGAGCGCCACCCGGTGCTCACCTTCGTCGGCGCGTACGACGAGAAGCAGATCACCGCCGCGATCAGGCGCGAGCTGCTGCGCGAGGGCCAGGTGTTCTACATCCACAACAAGGTGGAGTCGATCGAGCGGGCCGCCCAGCGCCTGACCGAGCTGGTGCCGGAGGCCCGGATCGCGGTGGCCCACGGCAAGATGCACGAGAAGCAGCTGGAGCAGGTGATCGTCGACTTCTGGGAGAAGAGGTTCGACGTGCTGGTCTGCACGACGATCGTCGAGACCGGCCTGGACATCTCCAACGCCAACACGCTGATCCTCGAGCGCGCCGACCGGCTGGGCCTGTCCCAGCTGCACCAGCTGCGCGGCCGCGTCGGCCGGGGCCGGGAGCGGGCCTACGCCTACTTCCTCTACCCGCCGGAGGCTCCCCTCACCGAGACGGCCCACGACCGGCTCGCCACGATCGCCGCGAACACCGATCTCGGTGCCGGCATGGCGGTCGCGATGAAGGACCTGGAGATCCGCGGCGCGGGCAACCTGCTCGGCGGCGAGCAGTCGGGCCACATCGAGGGCGTCGGCTTCGACCTGTACGTGCGGATGGTGGGGGAGGCCGTGGCGGCGTTCCGCGGCGACCAGCCGGAGGAGCAGCCGGACGTCACGCTCGAGCTGCCGGTGGACGCGCACATCCCGCACGACTACATCGCGCACGAGCGGCTGCGCCTCGAGGCGTACCAGAAGATCGCCGCTGCCACCGACAAGGCCGGGCTCGAGGCCGTCCGGGCCGAGCTGCTGGACCGGTACGGGCTGGTGCCGTCCGCGGTGGACAACCTCTTCGAGGTCGCGGCGTTCCGGCAGCACGCCCGGGCTGCGGGTCTGACGGACATCACGGCGCAGGGCCGGTACGTGCGGTTCGCGCCCGTCGAGCTGGCCGAGTCCGGTCAGCTGCGGGCCAAGCGGCTGTACCCCGGCACGGTGCTGAAGCCGGCGGTGCGCACCATCCTGGTGCCGTTCCCGACGACGGCCCGAGTGGGTGGCAAGCCGCTGCACGGTGCGGCGCTGCTCGAGTGGGCGCGGACCGTGGTCGATGCGGTGGTCCGCGGCGACGTGTCGGCTGCGGCGGGCGTCGGGACGGCCGCGCGCTGA
PROTEIN sequence
Length: 1218
MDLTGLLPALLADPAAAEAVQQVRARGELDVVSPAGVRPPLLAAMAGARPAGSPAVAAGRPLVVVTATGRDADELAGALRCYLPDDDVAVLPAWETLPHERLSPRSDTVARRLAVFRRLAHPSEPGPAGPVRVLVVPVRALLQPVVDGLGELVPVQLAVGDRVDLDQLAQGLVDAAYTRVDMVERRGEFAVRGGIVDVFPPTEDHPLRIELWGDQVEEIRWFSVADQRSLEVPDRGLWAPPCREILLTDAVRERAAALVEQLPGAVDMLDRLAQGIAVEGMESLAPVLVDRMVPVLDLVPDDALLVIADPERVRRRAHDLVATTQEFLAAAWTGAAAGGATPLDLSAASFHSFAEVRGLSAVRGLGWWTLSSFSLEVAAAPAGADGEHDDAADDGPAVSSDATTLLVAARDVEHYRGDVARAITDLHAHQQDGWRMVLTTEGHGSAQRMVEQLRSADVPARLVSGVPDELDPGVVLVVPAPAGPGFASEQLRLALFSESDLTGRAGTSTRDMRRMPSRRRNVVDPLQLRPGDFVVHEQHGVGRFVELVQRTIGTGPTAATREYLVIEYASAKRGQPGDRLYVPTDQLDQVTRYVGGESPTLNRMGGADWAKTKGRAKKAIKEIAAELIRLYSARMATPGYAFGPDTPWQRELEDAFAYVETPDQLATIDEVKADMEKSVPMDRLICGDVGYGKTEIAIRAAFKAVQDGKQVAVLVPTTLLVSQHLETFSERYAPFPVTVKALSRFETASESKEVLDGLADGSVDVVIGTHRLLAGGVRFKDLGLVIVDEEQRFGVEHKETLKALRTDVDVLSMSATPIPRTLEMAVTGIREMSTLATPPEERHPVLTFVGAYDEKQITAAIRRELLREGQVFYIHNKVESIERAAQRLTELVPEARIAVAHGKMHEKQLEQVIVDFWEKRFDVLVCTTIVETGLDISNANTLILERADRLGLSQLHQLRGRVGRGRERAYAYFLYPPEAPLTETAHDRLATIAANTDLGAGMAVAMKDLEIRGAGNLLGGEQSGHIEGVGFDLYVRMVGEAVAAFRGDQPEEQPDVTLELPVDAHIPHDYIAHERLRLEAYQKIAAATDKAGLEAVRAELLDRYGLVPSAVDNLFEVAAFRQHARAAGLTDITAQGRYVRFAPVELAESGQLRAKRLYPGTVLKPAVRTILVPFPTTARVGGKPLHGAALLEWARTVVDAVVRGDVSAAAGVGTAAR*