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SCN18_25_1_16_R2_B_scaffold_4708_1

Organism: SCN18_25_1_16_R2_B_SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial_73_8

near complete RP 46 / 55 MC: 3 BSCG 47 / 51 MC: 4 ASCG 14 / 38 MC: 1
Location: comp(1..1143)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Saccharopolyspora spinosa RepID=UPI0002378BC1 similarity UNIREF
DB: UNIREF100
  • Identity: 77.2
  • Coverage: 372.0
  • Bit_score: 567
  • Evalue 9.90e-159
RNA polymerase sigma-70 factor, ECF subfamily {ECO:0000313|EMBL:EWC60852.1}; TaxID=909613 species="Bacteria; Actinobacteria; Pseudonocardiales; Pseudonocardiaceae; Actinokineospora.;" source="Actinokineospora spheciospongiae.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 76.3
  • Coverage: 375.0
  • Bit_score: 568
  • Evalue 6.20e-159
ECF subfamily RNA polymerase sigma-24 subunit similarity KEGG
DB: KEGG
  • Identity: 74.9
  • Coverage: 375.0
  • Bit_score: 554
  • Evalue 1.40e-155

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Taxonomy

SCNPILOT_CONT_500_BF_Cellulomonas_73_12_partial → Cellulomonas → Micrococcales → Actinobacteria → Actinobacteria → Bacteria

Sequences

DNA sequence
Length: 1143
GTGACGCGGCTCGACCCGACCCGCCTCGACCCGGTCGAGGAGGCGATCACCCGGGCCCACCGTGAGGAGTGGGCCCGGGTGGTCGCCACCCTCACCCGACGGCTCGGCGACCTGGGTGCCGCCGAGGACGCCGCCGCCGACGCGTTCGCGACCGCCGTCGAGCGCTGGCCGCACGACGGCGTCCCGCCCAACCCCGGCGGCTGGCTGACCACCACCGCGACCCGCAAGGCGATCGACCGCCTGCGCCGCGAGCTGCGCCGTGACGAGAAGCACCAGGAGGCCGCGTTGCTGCACGACGACGACCCTCCGCTGGACCGCGGCGCCGTCGAGGACGACCGGCTGCGGCTCGTGTTCACGTGCTGCCACCCGGCGCTGTCGCCGGAGGCGCGGGTCGCGCTGACGCTGCGGATGGTCGGCGGCCTGACGATGCCGCAGATCGCGCGGGCGTTCCTGGTGCCCGAGGCGACGATGGGCCAACGGCTGACCAGGGCGAAGGCGAAGATCCGGGCCGCGCACGTGCCGTACCGGGTGCCGACGGCGCAGGACCTGCCGGCGCGGCTCGACGCGGTGCTCACGGTGCTCTTCCTCGTCTTCAACGAGGGCTACCTCGCCACCGGTGGCGACACCGAGCCCGTCCGTGCCGACCTGACCGCCGAGGCGATCCGGCTGACCCGGCTGGTCCGCGAGCTGCTGCCGGACGACTCCGGCGAGGTGACCGGGCTGCTCGCGCTGATGCTGCTGACCGAGGCGCGCCGGCCGGCCCGCGTGTCGTCCACCGGCGAGCTGGTGACGCTCGGCGAGCAGGACCGCAGCCGCTGGGACTCCGAGCTGGTCGACGAGGGGCACCACCTGGTGCGGGAACGCCTCGCGGCCGTGGCCGCCGGTGGTCCGCCTCCGGGCCGTTACCAGCTGCTGGCGGCGATCAACGCGGTGCACACGGCGGCCCGCGACGCACGGGACACCGACTGGTCCCAGGTGGTGACGCTGTACGACCGGCTGGTGCGCGTCGACCCGTCACCGCTGGTGGCGCTCGACCGCGCGATCGCGGTTGCCGAGCTGGACGGCCCCGACGTCGCGCTTGCCTTGGTCGACCGGCTGCCGCTGGCCGGCCATCACGCGTTCCACGTGACGCGCGCGGAGCTG
PROTEIN sequence
Length: 381
VTRLDPTRLDPVEEAITRAHREEWARVVATLTRRLGDLGAAEDAAADAFATAVERWPHDGVPPNPGGWLTTTATRKAIDRLRRELRRDEKHQEAALLHDDDPPLDRGAVEDDRLRLVFTCCHPALSPEARVALTLRMVGGLTMPQIARAFLVPEATMGQRLTRAKAKIRAAHVPYRVPTAQDLPARLDAVLTVLFLVFNEGYLATGGDTEPVRADLTAEAIRLTRLVRELLPDDSGEVTGLLALMLLTEARRPARVSSTGELVTLGEQDRSRWDSELVDEGHHLVRERLAAVAAGGPPPGRYQLLAAINAVHTAARDARDTDWSQVVTLYDRLVRVDPSPLVALDRAIAVAELDGPDVALALVDRLPLAGHHAFHVTRAEL