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SCN18_13_7_16_R5_B_scaffold_398_6

Organism: SCN18_13_7_16_R5_Bosea_sp_LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15_67_8

near complete RP 45 / 55 MC: 5 BSCG 47 / 51 MC: 6 ASCG 10 / 38 MC: 2
Location: 3771..5219

Top 3 Functional Annotations

Value Algorithm Source
channel protein TolC n=1 Tax=Methylocystis rosea RepID=UPI00036DCB68 similarity UNIREF
DB: UNIREF100
  • Identity: 26.8
  • Coverage: 466.0
  • Bit_score: 115
  • Evalue 7.60e-23
Strain MEJ076 contig_43, whole genome shotgun sequence {ECO:0000313|EMBL:KIP98159.1}; TaxID=358 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium; Agrobacterium tumefaciens complex.;" source="Rhizobium radiobacter (Agrobacterium tumefaciens) (Agrobacterium; radiobacter).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 34.4
  • Coverage: 465.0
  • Bit_score: 225
  • Evalue 9.60e-56
type I secretion outer membrane protein, TolC family similarity KEGG
DB: KEGG
  • Identity: 26.4
  • Coverage: 469.0
  • Bit_score: 110
  • Evalue 9.10e-22

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Taxonomy

Bosea sp. LC85_SCNPILOT_EXPT_1000_BF_Rhizobiales_65_15 → Bosea → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1449
ATGGGACAAGCCAAGAAAATCGTGGCCTTTGTTGCGCTCGCAGTCGCAGCGTCCGCTTTGGCGGGCTGCGCGAGCAACGGTCTCCAAGGCGCTTCCACATCGCCCGAGTGCCTACCGCGCGAGAACGACGAGACCACCGCCTCCGACTGCACGCTTGCTGTGCCGAACACCACTTCGACCGTCGCGGCCTTGTCGCTGCCGCCATCGCTACGCGCCGGCTCCGCGCTCGACGTCGTCGCCAAGAGCCCGGAAGTCCTGGCAGCTGAAGCCCGGCACAGCGCTGCCGCCGAGGAGATCGACATCGCACGCGCCGCCAAGCTGCCGACCGCCGGCATTCAGGCGAGCTATGGTGCCGGGAGCGAGTATAGTTCCAGCTATGCGGGGTATTCCGGCCAGCGCTCGGGGAACGTCTATTCCTACGCGCTGGGCGTCGAGATCCCGCTCTATCAGGGCGGCCGCACCGATGCGGCCATCGCCGCCGCGCGCGCCGATTACAGGGCCTCGGGCGAAGCGGCCACGGACAGGCGCGTCGCGACCGGCTACGAGCTGGCGATCGCCCTGCTGCGCATCCAGCAGCAGCGCGAGTTGATTGCCGCACTCGACCGGCAGCGCAGCGCGCTTGGCAAGCTCCATGACAATGTGCAGGTCGAACTCACCGCCGGCAGCGCCAGCCGCGTCGATCTCGACGATATCGGCCGCCAGGTCGCCCGCATCGCCGTGTACCGCGAAAGCGCGCAGCTCGCCATTGCCGACGCCGAACGGACCACGAAGCGCCTCGGTGCCCCTGCCAATGCGAAGCCGCCCCGTATCGCGCAGCTGAAGCTCGGCGAGAGCAAGCAGGCCCTGATCGACCTGGCACTGCAGAACAACCCCCGCATCCGCGAGCGCGGCGCCAGGGTCGACGCCGCTAAGGCCCGGATCGACCAGGCGAAGGGTGAATTGCTGCCCACGGTCTCGGTCGGCATGCGGGCCGTCGGCGAAAAGACCGAGCTGGCGGTTGCCGACAAGATCCATGGCGGCAGGGCGGAACTGCGTCTCTCCATGCCCTTCGACCTGAGCGGCGTGCACTCGGCGACGATCCGGCGCCGGTCGGACGAGAAGCTCGCCGCTCAGTTCGACCGCGAAGCGGCCCTGGACGGGGTCTCTGCGGCGGTGAACTCGGCCTTCGAGCGCCGGGCGCGCGCGCGCCGAATGCACACGCTCGCCCAGGCCGAACGGCGCAGCGCGGTGGCGATGCTCGAGGGTGTGCGCGCCGAAAGGAAGGTCGGCGAGCGCTCGACCTTCGACGAAATCCGCGCGATCGAGAACCTCACCAGTGCCGAGACGAGCATGAACCTCGCCAAATACGAGCTGCAGGCGGCCGAATACACCCTGGCGGCGGAGACCGGCCTGATCGAGCGGCTGATGGCGCCGCCGGCGTCGCTGGCGATCGCCCAGGCGGAAAAGTAG
PROTEIN sequence
Length: 483
MGQAKKIVAFVALAVAASALAGCASNGLQGASTSPECLPRENDETTASDCTLAVPNTTSTVAALSLPPSLRAGSALDVVAKSPEVLAAEARHSAAAEEIDIARAAKLPTAGIQASYGAGSEYSSSYAGYSGQRSGNVYSYALGVEIPLYQGGRTDAAIAAARADYRASGEAATDRRVATGYELAIALLRIQQQRELIAALDRQRSALGKLHDNVQVELTAGSASRVDLDDIGRQVARIAVYRESAQLAIADAERTTKRLGAPANAKPPRIAQLKLGESKQALIDLALQNNPRIRERGARVDAAKARIDQAKGELLPTVSVGMRAVGEKTELAVADKIHGGRAELRLSMPFDLSGVHSATIRRRSDEKLAAQFDREAALDGVSAAVNSAFERRARARRMHTLAQAERRSAVAMLEGVRAERKVGERSTFDEIRAIENLTSAETSMNLAKYELQAAEYTLAAETGLIERLMAPPASLAIAQAEK*